Evidence map›Paper›PMID 32868815›Full record

ArticleScientific reports2020

The bHLH transcription factor VfTT8 underlies zt2, the locus determining zero tannin content in faba bean (Vicia faba L.).

Natalia Gutierrez, Carmen M Avila, Ana M Torres

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
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  5. Review
  6. Article
  7. Article
  8. Homolog of PeaGenes · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Natalia GutierrezÁrea de Genómica y Biotecnología, IFAPA-Centro Alameda del Obispo, Apdo 3092, 14080, Córdoba, Spain. natalia.gutierrez.leiva@juntadeandalucia.es.ORCID http://orcid.org/0000-0001-5248-0390
Carmen M AvilaÁrea de Genómica y Biotecnología, IFAPA-Centro Alameda del Obispo, Apdo 3092, 14080, Córdoba, Spain.
Ana M TorresÁrea de Genómica y Biotecnología, IFAPA-Centro Alameda del Obispo, Apdo 3092, 14080, Córdoba, Spain.
Andalusian Institute of Agricultural and Fisheries Research and Training · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Faba bean (Vicia faba L.) is an important protein-rich fodder crop, which is widely cultivated in temperate areas. However, antinutritional compounds such as condensed tannins, limit the use of this protein source in monogastric feed formulations. Previous studies demonstrated that two recessive and complementary genes, zt1 and zt2, control absence of tannin and white flower colour in faba bean. An ortholog of the Medicago WD40 transcription factor TTG1 was reported to encode the zt1 phenotype, but the responsible gene for zt2 is still unknown. Here we used a candidate gene approach combined with linkage mapping, comparative genomics and gene expression to fine map the zt2 genomic region and to identify the regulatory gene controlling both traits. Seventy-two genes, including 23 MYB and bHLH regulatory genes predicted to be associated with anthocyanin expression together with WRKY proteins, were screened and genotyped in three mapping populations. The linkage groups constructed identified the regulatory gene, TRANSPARENT TESTA8 (TT8), encoding a basic helix-loop-helix (bHLH) transcription factor, as the candidate for zt2. This finding was supported by qPCR analysis and further validated in different genetic backgrounds. Accordingly, VfTT8 was downregulated in white flowered types while showing high levels of expression in wild genotypes. Our results provide new insights on the regulatory mechanisms of tannin biosynthesis in faba bean and will facilitate the development of an ultimate zt2 diagnostic marker for the fast generation of new value-added cultivars free of tannins and with improved nutritional value.

Indexed as

Basic Helix-Loop-Helix ProteinsChromosome MappingGenes, PlantGenetic LociGenotyping TechniquesPlant ProteinsQuantitative Trait, HeritableReal-Time Polymerase Chain ReactionSequence Analysis, DNATanninsVicia fabaBasic Helix-Loop-Helix ProteinsPlant ProteinsTannins

Identifiers

PMID32868815
PMCPMC7459296
OpenAlexW3081954971

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.