Evidence map›Paper›PMID 32868339›Full record

ArticleDiabetes2020

Next-Generation HLA Sequence Analysis Uncovers Seven HLA-DQ Amino Acid Residues and Six Motifs Resistant to Childhood Type 1 Diabetes.

Lue Ping Zhao, George K Papadopoulos, William W Kwok, Antonis K Moustakas, George P Bondinas, Annelie Carlsson, Helena Elding Larsson, Johnny Ludvigsson, Claude Marcus, Ulf Samuelsson and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Diabetes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Lue Ping ZhaoPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA lzhao@fredhutch.org papadopg@gmail.com ake.lernmark@med.lu.se.ORCID 0000-0002-1387-7165
George K PapadopoulosLaboratory of Biophysics, Biochemistry, Biomaterials and Bioprocessing, Faculty of Agricultural Technology, Technological Educational Institute of Epirus, Arta, Greece lzhao@fredhutch.org papadopg@gmail.com ake.lernmark@med.lu.se.ORCID 0000-0002-6944-6591
William W KwokBenaroya Research Institute at Virginia Mason, Seattle, WA.
Antonis K MoustakasDepartment of Food Science and Technology, Faculty of Environment, Ionian University, Argostoli, Cephalonia, Greece.
George P BondinasLaboratory of Biophysics, Biochemistry, Biomaterials and Bioprocessing, Faculty of Agricultural Technology, Technological Educational Institute of Epirus, Arta, Greece.
Annelie CarlssonDepartment of Pediatrics, Lund University, Lund, Sweden.
Helena Elding LarssonDepartment of Clinical Sciences, Lund University Clinical Research Centre, Skåne University Hospital, Malmö, Sweden.
Johnny LudvigssonCrown Princess Victoria Children's Hospital and Division of Pediatrics, Department of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden.
Claude MarcusDivision of Pediatrics, Department of Clinical Science, Intervention and Technology, Karolinska Institutet, Stockholm, Sweden.
Ulf SamuelssonCrown Princess Victoria Children's Hospital and Division of Pediatrics, Department of Biomedical and Clinical Sciences, Linköping University, Linköping, Sweden.
Ruihan WangClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
Chul-Woo PyoClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
Wyatt C NelsonClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
Daniel E GeraghtyClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
Åke LernmarkDepartment of Clinical Sciences, Lund University Clinical Research Centre, Skåne University Hospital, Malmö, Sweden lzhao@fredhutch.org papadopg@gmail.com ake.lernmark@med.lu.se.ORCID 0000-0003-1735-0499
Fred Hutch Cancer Center · USLund University · SELinköping University Hospital · SETechnological Educational Institute of Epirus · GRKarolinska Institutet · SETechnological Educational Institute of the Ionian Islands · GRVirginia Mason Medical Center · US

Funding

The Environmental Triggers of Diabetes (TEDDY) in SwedenU01DK063861 · NIDDK · UNIVERSITY OF WASHINGTON · PI LERNMARK, AKE · 2003 to 2022
$13.4M
The Environmental Triggers of Diabetes (TEDDY)UC4DK063861 · NIDDK · LUNDS UNIVERSITET · PI LERNMARK, AKE · 2013 to 2013
$5.7M
ISLET CELL MEMBRANE ANTIBODIES IN DIABTESR01DK026190 · NIDDK · UNIVERSITY OF WASHINGTON · PI HAMPE, CHRISTIANE S · 1986 to 2016
$4.9M
Discovering Conformational Regulatory Segments (CRS) Responsible for Progression from Seroconversion to Type 1 DiabetesR56DK117276 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GERAGHTY, DANIEL E., LERNMARK, AKE · 2018 to 2018
$436k
NIDDK NIH HHS R01 DK026190NIDDK NIH HHS R56 DK117276NIDDK NIH HHS U01 DK063861NIDDK NIH HHS UC4 DK063861
6 · The paper itself

Abstract

HLA-DQA1 and -DQB1 genes have significant and potentially causal associations with autoimmune type 1 diabetes (T1D). To follow up on the earlier analysis on high-risk HLA-DQ2.5 and DQ8.1, the current analysis uncovers seven residues (αa1, α157, α196, β9, β30, β57, and β70) that are resistant to T1D among subjects with DQ4-, 5-, 6-, and

Indexed as

Amino Acid MotifsAmino Acid SequenceDiabetes Mellitus, Type 1Gene Expression RegulationGenetic Predisposition to DiseaseHaplotypesHigh-Throughput Nucleotide SequencingHLA-DQ AntigensHumansModels, MolecularProtein ConformationHLA-DQ Antigens

Identifiers

PMID32868339
PMCPMC7576571
OpenAlexW3082198486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.