Evidence map›Paper›PMID 32867805›Full record

ArticleRetrovirology2020

Influence of the amino-terminal sequence on the structure and function of HIV integrase.

Grant Eilers, Kushol Gupta, Audrey Allen, Jeffrey Zhou, Young Hwang, Michael B Cory, Frederic D Bushman, Gregory Van Duyne

Abstract read
In one paragraph

Article in Retrovirology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Grant EilersDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0001-9191-5932
Kushol GuptaDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Audrey AllenDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Jeffrey ZhouDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Young HwangDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Michael B CoryDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Frederic D BushmanDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. bushman@pennmedicine.upenn.edu.
Gregory Van DuyneDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. vanduyne@pennmedicine.upenn.edu.

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
First-in-human study of two anti-SARS CoV-2 antibodies in health volunteersUM1AI126620 · NIAID · WISTAR INSTITUTE · PI MONTANER, LUIS J, RILEY, JAMES L. · 2016 to 2021
$24.5M
Sequencing and Viral Evolution CoreU19AI117950 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI WHERRY, E. JOHN · 2015 to 2019
$12.0M
TRAINING IN HIV PATHOGENESIST32AI007632 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Frederic D Bushman, James L. Riley · 2000 to 2026
$10.6M
Lung Transplant Microbiome and Chronic Allograft DysfunctionR01HL113252 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI BUSHMAN, FREDERIC D, CHRISTIE, JASON D · 2013 to 2016
$2.9M
Optimization HIV Inhibition by Allosteric Integrase InhibitorsR01AI129661 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BUSHMAN, FREDERIC D, VAN DUYNE, GREGORY D · 2017 to 2021
$2.2M
A New View of PAH Allostery - Correlation with Disease-Associated AllelesR01NS100081 · NINDS · RESEARCH INST OF FOX CHASE CAN CTR · PI JAFFE, EILEEN K · 2016 to 2020
$2.0M
The Lung DNA Virome in Health and DiseaseR61HL137063 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI BUSHMAN, FREDERIC D, COLLMAN, RONALD G · 2017 to 2018
$605k
National Institute of Allergy and Infectious Diseases P30-AI045008National Institute of Allergy and Infectious Diseases R01-AI129661National Institute of Allergy and Infectious Diseases T32-AI007632National Institute of Allergy and Infectious Diseases U19-AI117950National Institute of Allergy and Infectious Diseases UM1-AI126620NHLBI NIH HHS R01 HL113252NHLBI NIH HHS R01-HL113252NHLBI NIH HHS R61 HL137063NHLBI NIH HHS R61-HL137063NIAID NIH HHS P30 AI045008NIAID NIH HHS R01 AI129661NIAID NIH HHS T32 AI007632NIAID NIH HHS U19 AI117950NIAID NIH HHS UM1 AI126620NINDS NIH HHS R01 NS100081NINDS NIH HHS R01-NS100081
6 · The paper itself

Abstract

backgroundAntiretroviral therapy (ART) can mitigate the morbidity and mortality caused by the human immunodeficiency virus (HIV). Successful development of ART can be accelerated by accurate structural and biochemical data on targets and their responses to inhibitors. One important ART target, HIV integrase (IN), has historically been studied in vitro in a modified form adapted to bacterial overexpression, with a methionine or a longer fusion protein sequence at the N-terminus. In contrast, IN present in viral particles is produced by proteolytic cleavage of the Pol polyprotein, which leaves a phenylalanine at the N-terminus (IN 1F). Inspection of available structures suggested that added residues on the N-terminus might disrupt proper protein folding and formation of multimeric complexes.

resultsWe purified HIV-1 IN 1F

conclusionsThe structural, biochemical, and biophysical characterization of IN 1F reveals the conformation of the native HIV-1 IN N-terminus and accompanying unique biochemical and biophysical properties. IN 1F thus represents an improved reagent for use in integration reactions in vitro and the development of antiretroviral agents.

Indexed as

Allosteric RegulationCrystallography, X-RayDNA, ViralHIV-1HIV IntegraseHIV Integrase InhibitorsHumansPhenylalanineProtein ConformationProtein FoldingRaltegravir PotassiumStructure-Activity RelationshipDNA, ViralHIV IntegraseHIV Integrase Inhibitorsp31 integrase protein, Human immunodeficiency virus 1PhenylalanineRaltegravir PotassiumBiophysicsHIVIntegrasesProtein structureRetroviridaeX-ray crystallography

Identifiers

PMID32867805
PMCPMC7457537

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.