Evidence map›Paper›PMID 32867691›Full record

ArticleBMC microbiology2020

Identification and characterization of the bacteriocin Carocin S3 from the multiple bacteriocin producing strain of Pectobacterium carotovorum subsp. carotovorum.

Jyun-Wei Wang, Reymund C Derilo, Ruchi Briam James S Lagitnay, Huang-Pin Wu, Kai-In Chen, Duen-Yau Chuang

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Biocontrol of Soft Rot Caused byMicroorganisms · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Jyun-Wei WangDepertment of Gastroenterology, Chang Bing Show Chwan Memorial Hospital, 6 Lukon Road, Lukong Town, Changhua, 505, Taiwan.
Reymund C DeriloDepartment of Chemistry, National Chung-Hsing University, 250, Kuokuang Rd, Taichung City, 402, Taiwan.
Ruchi Briam James S LagitnayDepartment of Chemistry, National Chung-Hsing University, 250, Kuokuang Rd, Taichung City, 402, Taiwan.
Huang-Pin WuDivision of Pulmonary, Critical Care and Sleep Medicine, Chang Gung Memorial Hospital, Keelung, Taiwan.
Kai-In ChenDepartment of Chemistry, National Chung-Hsing University, 250, Kuokuang Rd, Taichung City, 402, Taiwan.
Duen-Yau ChuangDepartment of Chemistry, National Chung-Hsing University, 250, Kuokuang Rd, Taichung City, 402, Taiwan. chuang@dragon.nchu.edu.tw.
National Chung Hsing University · TWChang Bing Show Chwan Memorial Hospital · TWChang Gung University · TW

Funding

Chang Bing Show Chwan Memorial Hospital RD-105042
6 · The paper itself

Abstract

backgroundPectobacterium carotovorum subsp. carotovorum belongs to the Enterobacteriaceae family, which causes soft-rot disease in numerous plants worldwide resulting in significant economic losses. Results from our previous studies showed that the strain H-rif-8-6 produces low-molecular-weight bacteriocin (LMWB) Carocin S1. Interestingly, TH22-10, the caroS1K:Tn5 insertional mutant in H-rif-8-6, loses Carocin S1 producing ability, but still produces other LMWBs which the indicator strain SP33 can detect. The SP33 is one of the many strains that are sensitive toward the cytotoxic effects of Carocin S3K, but not Carocin S1. The result revealed that H-rif-8-6 is a multiple-bacteriocin producing strain.

resultsIn this study, a 4.1-kb DNA fragment was isolated from the chromosomal DNA of Pcc strain, H-rif-8-6, by a DNA probe using the caroS1K gene as the template. DNA sequencing and analysis by GenBank revealed two complete open reading frames (ORFs), designated ORF1 and ORF2, which were identified within the sequence fragment. ORF1 and ORF2, similar to the identified carocin S2 genes, encode the killer (Carocin S3K) and the immunity (Carocin S3I) proteins, respectively, which were homologous to the colicin E3 gene. Carocin S3K and Carocin S3I were expressed, isolated, and purified in Escherichia coli BL21 after subcloning of the expression plasmid pGS3KI or pGSK3I. SDS-PAGE analysis showed that the relative masses of Carocin S3K and Carocin S3I were 95.6 kDa and 10.2 kDa, respectively. The results reveal that Carocin S3K has higher antimicrobial and specific antimicrobial activities for Pcc along with a nuclease activity than Carocin S3I. However, Carocin S3I inhibits the activity of Carocin S3K. Interestingly, a high concentration of Carocin S3I protein is also a DNA nuclease, and Carocin S3K also inhibits its activity.

conclusionThis study showed that another type of bacteriocin was found in Pectobacterium carotovorum. This new type of bacteriocin, Carocin S3, has the killer protein, Carocin S3K, and the immunity protein, Carocin S3I.

Indexed as

BacteriocinsCloning, MolecularDeoxyribonucleasesEscherichia coliGene LibraryMolecular WeightPectobacteriumSpectrometry, Mass, Electrospray IonizationBacteriocinsDeoxyribonucleasesCarocin S3Low-molecular-weight BacteriocinPectobacterium carotovorum subsp. carotovorum

Identifiers

PMID32867691
PMCPMC7461348
OpenAlexW3082107276

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.