Evidence map›Paper›PMID 32865981›Full record

ArticleAnalytical chemistry2020

Accurate Identification of Isomeric Glycans by Trapped Ion Mobility Spectrometry-Electronic Excitation Dissociation Tandem Mass Spectrometry.

Juan Wei, Yang Tang, Mark E Ridgeway, Melvin A Park, Catherine E Costello, Cheng Lin

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  4. Review
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  10. Article
  11. High-ResolutionAnalytical chemistry · 2023
    Article
  12. Article
  13. Chemical science · 2023
    Article
  14. Enhancing the Depth of Analyses with Next-Generation Ion Mobility Experiments.Annual review of analytical chemistry (Palo Alto, Calif.) · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Measuring change in glycoprotein structure.Current opinion in structural biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Juan WeiCenter for Biomedical Mass Spectrometry, Boston University School of Medicine, 670 Albany Street, Room 508, Boston, Massachusetts 02118, United States.
Yang TangCenter for Biomedical Mass Spectrometry, Boston University School of Medicine, 670 Albany Street, Room 508, Boston, Massachusetts 02118, United States.
Mark E RidgewayBruker Daltonics, Billerica, Massachusetts 01821, United States.
Melvin A ParkBruker Daltonics, Billerica, Massachusetts 01821, United States.
Catherine E CostelloCenter for Biomedical Mass Spectrometry, Boston University School of Medicine, 670 Albany Street, Room 508, Boston, Massachusetts 02118, United States.ORCID 0000-0003-1594-5122
Cheng LinCenter for Biomedical Mass Spectrometry, Boston University School of Medicine, 670 Albany Street, Room 508, Boston, Massachusetts 02118, United States.ORCID 0000-0003-3653-9633
Boston University · USBruker (United States) · US

Funding

Legacy Support During Closure of the Mass Spectrometry Resource for Biology and MedicineR24GM134210 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI COSTELLO, CATHERINE E. · 2019 to 2021
$2.1M
High-Throughput De Novo Glycan SequencingR01GM132675 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI HONG, PENGYU, LIN, CHENG · 2019 to 2022
$2.0M
LTQ-FT MS System for On-line Protein and Glycan AnalysisS10RR025082 · NCRR · BOSTON UNIVERSITY MEDICAL CAMPUS · PI COSTELLO, CATHERINE E. · 2009 to 2009
$1.3M
Molecular mechanisms of allorecognition in a basal chordateR01GM123267 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI DE TOMASO, ANTHONY W · 2017 to 2020
$1.2M
Characterization of glycan isomers by trapped ion mobility spectrometry-electron activated dissociation tandem mass spectrometryR21GM122635 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI LIN, CHENG · 2016 to 2017
$629k
NCRR NIH HHS S10 RR025082NIGMS NIH HHS R01 GM123267NIGMS NIH HHS R01 GM132675NIGMS NIH HHS R21 GM122635NIGMS NIH HHS R24 GM134210
6 · The paper itself

Abstract

Ion mobility-mass spectrometry (IM-MS) has become a powerful tool for glycan structural characterization due to its ability to separate isomers and provide collision cross section (CCS) values that facilitate structural assignment. However, IM-based isomer analysis may be complicated by the presence of multiple gas-phase conformations of a single structure that not only increases difficulty in isomer separation but can also introduce the possibility for misinterpretation of conformers as isomers. Here, the ion mobility behavior of several sets of isomeric glycans, analyzed as their permethylated derivatives, in both nonreduced and reduced forms, was investigated by gated-trapped ion mobility spectrometry (G-TIMS). Notably, reducing-end reduction, commonly performed to remove anomerism-induced chromatographic peak splitting, did not eliminate the conformational heterogeneity of permethylated glycans in the gas phase. At a mobility resolving power of ∼100, 14 out of 22 structures showed more than one conformation. These results highlight the need to use IMS devices with high mobility resolving power for better separation of isomers and to acquire additional structural information that can differentiate isomers from conformers. Online electronic excitation dissociation (EED) MS/MS analysis of isomeric glycan mixtures following G-TIMS separation showed that EED can generate isomer-specific fragments while producing nearly identical tandem mass spectra for conformers, thus allowing confident identification of isomers with minimal evidence of any ambiguity resulting from the presence of conformers. G-TIMS EED MS/MS analysis of

Indexed as

Ion Mobility SpectrometryPolysaccharidesTandem Mass SpectrometryPolysaccharides

Identifiers

PMID32865981
PMCPMC8111820
OpenAlexW3081755044

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.