Evidence map›Paper›PMID 32865566›Full record

ArticleEndocrinology2020

Thyroid Hormone Induces DNA Demethylation in Xenopus Tadpole Brain.

Samhitha Raj, Yasuhiro Kyono, Christopher J Sifuentes, Elvira Del Carmen Arellanes-Licea, Arasakumar Subramani, Robert J Denver

Open access · bronzeAbstract read
In one paragraph

Article in Endocrinology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Endocrine responses to environmental variation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Article
  5. Thyroid hormone links environmental signals to DNA methylation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  6. Effects of Thyroid Powder on Tadpole (Animals : an open access journal from MDPI · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Obesity in male volcano miceFrontiers in nutrition · 2022
    Article
  12. Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Samhitha RajDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, Michigan.
Yasuhiro KyonoNeuroscience Graduate Program, University of Michigan, Ann Arbor, Michigan.
Christopher J SifuentesDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, Michigan.
Elvira Del Carmen Arellanes-LiceaDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, Michigan.
Arasakumar SubramaniDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, Michigan.
Robert J DenverDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, Michigan.
University of Michigan · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thyroid hormone (T3) plays pivotal roles in vertebrate development, acting via nuclear T3 receptors (TRs) that regulate gene transcription by promoting post-translational modifications to histones. Methylation of cytosine residues in deoxyribonucleic acid (DNA) also modulates gene transcription, and our recent finding of predominant DNA demethylation in the brain of Xenopus tadpoles at metamorphosis, a T3-dependent developmental process, caused us to hypothesize that T3 induces these changes in vivo. Treatment of premetamorphic tadpoles with T3 for 24 or 48 hours increased immunoreactivity in several brain regions for the DNA demethylation intermediates 5-hydroxymethylcytosine (5-hmC) and 5-carboxylcytosine, and the methylcytosine dioxygenase ten-eleven translocation 3 (TET3). Thyroid hormone treatment induced locus-specific DNA demethylation in proximity to known T3 response elements within the DNA methyltransferase 3a and Krüppel-like factor 9 genes, analyzed by 5-hmC immunoprecipitation and methylation sensitive restriction enzyme digest. Chromatin-immunoprecipitation (ChIP) assay showed that T3 induced TET3 recruitment to these loci. Furthermore, the messenger ribonucleic acid for several genes encoding DNA demethylation enzymes were induced by T3 in a time-dependent manner in tadpole brain. A TR ChIP-sequencing experiment identified putative TR binding sites at several of these genes, and we provide multiple lines of evidence to support that tet2 contains a bona fide T3 response element. Our findings show that T3 can promote DNA demethylation in developing tadpole brain, in part by promoting TET3 recruitment to discrete genomic regions, and by inducing genes that encode DNA demethylation enzymes.

Indexed as

AnimalsAnimals, Genetically ModifiedBrainCpG IslandsDemethylationDioxygenasesDNA DemethylationGene Expression Regulation, DevelopmentalLarvaMetamorphosis, BiologicalThyroid Hormone Receptors alphaThyroid HormonesXenopusXenopus ProteinsDioxygenasesTET3 protein, XenopusThyroid Hormone Receptors alphaThyroid HormonesXenopus Proteinsbrain developmentchromatinDNA methylationmetamorphosisthyroid hormoneXenopus

Identifiers

PMID32865566
PMCPMC7947600
OpenAlexW3082171528

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.