Evidence map›Paper›PMID 32864847›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2021

The rax homeobox gene is mutated in the eyeless axolotl, Ambystoma mexicanum.

Erik S Davis, Gareth Voss, Joel B Miesfeld, Juan Zarate-Sanchez, S Randal Voss, Tom Glaser

Open access · greenAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Genes · 2023
    Article
  4. A single-cell transcriptomic atlas of the human ciliary body.Cellular and molecular life sciences : CMLS · 2022
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Erik S DavisDepartment of Cell Biology and Human Anatomy, University of California Davis School of Medicine, Davis, California, USA.
Gareth VossDepartment of Neuroscience, Spinal Cord and Brain Injury Research Center, and Ambystoma Genetic Stock Center, University of Kentucky, Lexington, Kentucky, USA.
Joel B MiesfeldDepartment of Cell Biology and Human Anatomy, University of California Davis School of Medicine, Davis, California, USA.ORCID 0000-0001-5998-7346
Juan Zarate-SanchezDepartment of Cell Biology and Human Anatomy, University of California Davis School of Medicine, Davis, California, USA.
S Randal VossDepartment of Neuroscience, Spinal Cord and Brain Injury Research Center, and Ambystoma Genetic Stock Center, University of Kentucky, Lexington, Kentucky, USA.ORCID 0000-0002-8332-3176
Tom GlaserDepartment of Cell Biology and Human Anatomy, University of California Davis School of Medicine, Davis, California, USA.ORCID 0000-0003-1000-2301
University of California, Davis · USUniversity of Kentucky · US

Funding

Understanding the role of anti-apolipoprotein A-I antibodies in atherosclerotic cardiovascular diseaseP20GM130456 · NIGMS · UNIVERSITY OF KENTUCKY · PI M. Ashfaqul Alam · 2020 to 2026
$18.7M
Ambystoma Genetic Stock Center - Revision to Include Curation and Informatics ComponentP40OD019794 · OD · UNIVERSITY OF KENTUCKY · PI Stephen Randal Voss · 2015 to 2026
$6.3M
Research Resources for Model AmphibiansR24OD010435 · OD · UNIVERSITY OF KENTUCKY · PI SMITH, JERAMIAH JAMES, VOSS, STEPHEN RANDAL · 2012 to 2025
$5.7M
Genetic Basis of Congenital AnophthalmiaR01EY019497 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GLASER, THOMAS M. · 2009 to 2020
$3.3M
Developing Regeneration Resources for a Model AmphibianR24OD021479 · OD · UNIVERSITY OF KENTUCKY · PI THORSON, JON SCOTT, VOSS, STEPHEN RANDAL · 2016 to 2019
$2.3M
NEI NIH HHS R01 EY019497NIGMS NIH HHS P20 GM130456NIH HHS P40 OD019794NIH HHS R24 OD010435NIH HHS R24 OD021479
6 · The paper itself

Abstract

backgroundVertebrate eye formation requires coordinated inductive interactions between different embryonic tissue layers, first described in amphibians. A network of transcription factors and signaling molecules controls these steps, with mutations causing severe ocular, neuronal, and craniofacial defects. In eyeless mutant axolotls, eye morphogenesis arrests at the optic vesicle stage, before lens induction, and development of ventral forebrain structures is disrupted.

resultsWe identified a 5-bp deletion in the rax (retina and anterior neural fold homeobox) gene, which was tightly linked to the recessive eyeless (e) axolotl locus in an F2 cross. This frameshift mutation, in exon 2, truncates RAX protein within the homeodomain (P154fs35X). Quantitative RNA analysis shows that mutant and wild-type rax transcripts are equally abundant in E/e embryos. Translation appears to initiate from dual start codons, via leaky ribosome scanning, a conserved feature among gnathostome RAX proteins. Previous data show rax is expressed in the optic vesicle and diencephalon, deeply conserved among metazoans, and required for eye formation in other species.

conclusionThe eyeless axolotl mutation is a null allele in the rax homeobox gene, with primary defects in neural ectoderm, including the retinal and hypothalamic primordia.

Indexed as

MutationAmbystoma mexicanumAnimalsEmbryonic DevelopmentEye ProteinsGene Expression Regulation, DevelopmentalHomeodomain ProteinsTranscription FactorsEye ProteinsHomeodomain ProteinsTranscription FactorsAmbystomaanophthalmiaeye morphogenesisgeneticshomeodomainhypothalamusleaky scanninglens inductionmutationoptic vesiclepituitaryRaxribosomeRxsalamandertranscription factorurodele

Identifiers

PMID32864847
PMCPMC8907009
OpenAlexW3082137704

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.