Evidence map›Paper›PMID 32860238›Full record

ReviewAnnals of the New York Academy of Sciences2021

Advances in fungal chemical genomics for the discovery of new antifungal agents.

Alice Xue, Nicole Robbins, Leah E Cowen

Open access · greenAbstract readReview
In one paragraph

Review in Annals of the New York Academy of Sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Review
  3. The Contribution of Human Antimicrobial Peptides to Fungi.International journal of molecular sciences · 2025
    Review
  4. Primed for Discovery.Biochemistry · 2024
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Antifungal discovery.Current opinion in microbiology · 2022
    Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Alice XueDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Nicole RobbinsDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Leah E CowenDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0001-5797-0110
University of Toronto · CA

Funding

Systematic Analysis of Morphogenesis, Commensalism, and Virulence in a Leading Human Fungal PathogenR01AI127375 · NIAID · UNIVERSITY OF TORONTO · PI LEAH Elizabeth Cowen · 2017 to 2026
$5.3M
Targeting Hsp90 in cryptococcal fungal pathogenesisR01AI120958 · NIAID · UNIVERSITY OF TORONTO · PI BROWN, LAUREN ELAINE, COWEN, LEAH ELIZABETH · 2016 to 2019
$3.2M
Discovering novel antifungal agents via multi-species profiling of a structurally and stereochemically diverse, well-validated compound libraryR21AI141080 · NIAID · BROAD INSTITUTE, INC. · PI NAG, PARTHA PRATIM · 2019 to 2020
$452k
Canada Research Chairs Tier 1-Microbial Genomics&Infectious DiseaseCanadian Institute for Advanced Research Co-DirectorCanadian Institute for Advanced Research Fungal Kingdom: Threats&OpportunitiCIHR Foundation Grant (FDN-154288)National Institute of Allergy and Infectious Diseases 1R01AI120958-01A1National Institute of Allergy and Infectious Diseases 1R01AI127375-01National Institute of Allergy and Infectious Diseases 1R21AI141080-01NIAID NIH HHS R01 AI120958NIAID NIH HHS R01 AI127375NIAID NIH HHS R21 AI141080
6 · The paper itself

Abstract

Invasive fungal infections have escalated from a rare curiosity to a major cause of human mortality around the globe. This is in part due to a scarcity in the number of antifungal drugs available to combat mycotic disease, making the discovery of novel bioactive compounds and determining their mode of action of utmost importance. The development and application of chemical genomic assays using the model yeast Saccharomyces cerevisiae has provided powerful methods to identify the mechanism of action of diverse molecules in a living cell. Furthermore, complementary assays are continually being developed in fungal pathogens, most notably Candida albicans and Cryptococcus neoformans, to elucidate compound mechanism of action directly in the pathogen of interest. Collectively, the suite of chemical genetic assays that have been developed in multiple fungal species enables the identification of candidate drug target genes, as well as genes involved in buffering drug target pathways, and genes involved in general cellular responses to small molecules. In this review, we examine current yeast chemical genomic assays and highlight how such resources provide powerful tools that can be utilized to bolster the antifungal pipeline.

Indexed as

Drug DiscoveryAntifungal AgentsAspergillusCandida albicansCryptococcus neoformansGenome, FungalHumansAntifungal AgentsantifungalCandidachemical genomicsCryptococcusfungal pathogensSaccharomyces cerevisiae

Identifiers

PMID32860238
PMCPMC8514151
OpenAlexW3082221207

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.