ArticleBMC genetics2020
Transcriptomic and anatomic profiling reveal the germination process of different wheat varieties in response to waterlogging stress.
Article in BMC genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19 citing papers in PubMed, 43 citations in OpenAlex.
- Systems-Level Developmental Reprogramming Under Waterlogging Stress in Cowpea Revealed by Integrated Phenotypic, Physiological, and Transcriptomic Analysis.Plant, cell & environment · 2026Article
- Mitigation of soil water stress by moderately deep sowing and exogenous application of glucosinolates during the early seedling stage in rapeseed.Frontiers in plant science · 2026Article
- Integrated Transcriptome-Metabolome Analysis Reveals the Flavonoids Metabolism Mechanism of Maize Radicle in Response to Low Temperature.Plants (Basel, Switzerland) · 2025Article
- WGCNA analysis reveals hub genes in the Hemarthria compressa roots in response to waterlogging stress.Scientific reports · 2025Article
- Physicochemical, microbiological, and microstructural changes in germinated wheat grain.PloS one · 2025Article
- Different Phenotypic, Photosynthetic, and Physiological Responses to Flooding betweenPlants (Basel, Switzerland) · 2024Article
- The Changes of Amino-Acid Metabolism between Wheat and Rice during Early Growth under Flooding Stress.International journal of molecular sciences · 2024Article
- Transcriptome and metabolome analyses reveal molecular insights into waterlogging tolerance in Barley.BMC plant biology · 2024Article
- Physiological, Epigenetic, and Transcriptome Analyses Provide Insights into the Responses of Wheat Seedling Leaves to Different Water Depths under Flooding Conditions.International journal of molecular sciences · 2023Article
- Exploring the Potential of Multiomics and Other Integrative Approaches for Improving Waterlogging Tolerance in Plants.Plants (Basel, Switzerland) · 2023Review
- Tissue-Specific Transcriptome and Metabolome Analysis Reveals the Response Mechanism ofInternational journal of molecular sciences · 2023Article
- Transcriptome analysis of barley (Hordeum vulgare L.) under waterlogging stress, and overexpression of the HvADH4 gene confers waterlogging tolerance in transgenic Arabidopsis.BMC plant biology · 2023Article
- Transcriptome sequencing analyses uncover mechanisms of citrus rootstock seedlings under waterlogging stress.Frontiers in plant science · 2023Article
- The Role of Phytohormones in Plant Response to Flooding.International journal of molecular sciences · 2022Review
- Morphological, Biochemical, and Proteomic Analyses to Understand the Promotive Effects of Plant-Derived Smoke Solution on Wheat Growth under Flooding Stress.Plants (Basel, Switzerland) · 2022Article
- Cereal Germination under Low Oxygen: Molecular Processes.Plants (Basel, Switzerland) · 2022Review
- Genome-wide association scan and transcriptome analysis reveal candidate genes for waterlogging tolerance in cultivated barley.Frontiers in plant science · 2022Article
- Ecological strategy ofFrontiers in plant science · 2022Article
- ABA Biosynthesis and Signaling Cascades Under Hypoxia Stress.Frontiers in plant science · 2021Article
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Authors and funding
11 authors at 2 institutions in 1 country.
Funding
Abstract
backgroundWaterlogging is one of the most serious abiotic stresses affecting wheat-growing regions in China. Considerable differences in waterlogging tolerance have been found among different wheat varieties, and the mechanisms governing the waterlogging tolerance of wheat seeds during germination have not been elucidated.
resultsThe results showed no significant difference between the germination rate of 'Bainong 207' (BN207) (after 72 h of waterlogging treatment) and that of the control seeds. However, the degree of emulsification and the degradation rate of endosperm cells under waterlogging stress were higher than those obtained with the control treatment, and the number of amyloplasts in the endosperm was significantly reduced by waterlogging. Transcriptomic data were obtained from seed samples (a total of 18 samples) of three wheat varieties, 'Zhoumai 22' (ZM22), BN207 and 'Bainong 607' (BN607), subjected to the waterlogging and control treatments. A comprehensive analysis identified a total of 2775 differentially expressed genes (DEGs). In addition, an analysis of the correlations among the expression difference levels of DEGs and the seed germination rates of the three wheat varieties under waterlogging stress revealed that the relative expression levels of 563 and 398 genes were positively and negatively correlated with the germination rate of the wheat seeds, respectively. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses showed that the difference in the waterlogging tolerance among the three wheat varieties was related to the abundance of key genes involved in the glycolysis pathway, the starch and sucrose metabolism pathway, and the lactose metabolism pathway. The alcohol dehydrogenase (ADH) gene in the endosperm of BN607 was induced immediately after short-term waterlogging, and the energy provided by the glycolysis pathway enabled the BN607 seeds to germinate as early as possible; in addition, the expression of the AP2/ERF transcription factor was upregulated to further enhance the waterlogging tolerance of this cultivar.
conclusionsTaken together, the results of this study help elucidate the mechanisms through which different wheat varieties respond to waterlogging stress during germination.
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