Evidence map›Paper›PMID 32858041›Full record

ArticleGeneral and comparative endocrinology2020

An aryl hydrocarbon receptor from the caecilian Gymnopis multiplicata suggests low dioxin affinity in the ancestor of all three amphibian orders.

Sarah A Kazzaz, Sara Giani Tagliabue, Diana G Franks, Michael S Denison, Mark E Hahn, Laura Bonati, Wade H Powell

Open access · greenAbstract read
In one paragraph

Article in General and comparative endocrinology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Species Differences in Tryptophan Metabolism and Disposition.International journal of tryptophan research : IJTR · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Sarah A KazzazBiology Department, Kenyon College, Gambier, OH 43022, USA.
Sara Giani TagliabueDepartment of Earth and Environmental Sciences, University of Milano-Bicocca, Milan 20126, Italy.
Diana G FranksDepartment of Biology, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA.
Michael S DenisonDepartment of Environmental Toxicology, University of California-Davis, Davis, CA 95616, USA.
Mark E HahnDepartment of Biology, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA.
Laura BonatiDepartment of Earth and Environmental Sciences, University of Milano-Bicocca, Milan 20126, Italy.
Wade H PowellBiology Department, Kenyon College, Gambier, OH 43022, USA. Electronic address: powellw@kenyon.edu.
Kenyon College · USUniversity of Milano-Bicocca · ITWoods Hole Oceanographic Institution · USUniversity of California, Davis · US

Funding

Training CoreP42ES007381 · NIEHS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI HAHN, MARK E · 1995 to 2019
$46.1M
RECOMBINANT DETECTION SYSTEMS FOR DIOXIN LIKE CHEMICALSR01ES007685 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI DENISON, MICHAEL STEVEN · 1995 to 2019
$4.7M
AHR Signaling in Mammalian and Non-Mammalian ModelsR01ES006272 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 1999 to 2014
$4.1M
Multiple low-affinity aryl hydrocarbon receptors in the frog Xenopus laevisR15ES011130 · NIEHS · KENYON COLLEGE · PI POWELL, WADE H · 2001 to 2023
$1.8M
NIEHS NIH HHS P42 ES007381NIEHS NIH HHS R01 ES006272NIEHS NIH HHS R01 ES007685NIEHS NIH HHS R15 ES011130
6 · The paper itself

Abstract

The aryl hydrocarbon receptor (AHR) plays pleiotropic roles in the development and physiology of vertebrates in conjunction with xenobiotic and endogenous ligands. It is best known for mediating the toxic effects of dioxin-like pollutants such as 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD). While most vertebrates possess at least one AHR that binds TCDD tightly, amphibian AHRs bind TCDD with very low affinity. Previous analyses of AHRs from Xenopus laevis (a frog; order Anura) and Ambystoma mexicanum (a salamander; order Caudata) identified three amino acid residues in the ligand-binding domain (LBD) that underlie low-affinity binding. In X. laevis AHR1β, these are A354, A370, and N325. Here we extend the analysis of amphibian AHRs to the caecilian Gymnopis multiplicata, representing the remaining extant amphibian order, Gymnophiona. G. multiplicata AHR groups with the monophyletic vertebrate AHR/AHR1 clade. The LBD includes all three signature residues of low TCDD affinity, and a structural homology model suggests that its architecture closely resembles those of other amphibians. In transactivation assays, the EC50 for reporter gene induction by TCDD was 17.17 nM, comparable to X. laevis AhR1β (26.23 nM) and Ambystoma AHR (34.09 nM) and dramatically higher than mouse AhR (0.13 nM), a trend generally reflected in direct measures of TCDD binding. These shared properties distinguish amphibian AHRs from the high-affinity proteins typical of both vertebrate groups that diverged earlier (teleost fish) and those that appeared more recently (other tetrapods). These findings suggest the hypothesis that AHRs with low TCDD affinity represent a characteristic that evolved in a common ancestor of all three extant amphibian groups.

Indexed as

Ambystoma mexicanumAmino Acid SequenceAnimalsCloning, MolecularLigandsPhylogenyPolychlorinated DibenzodioxinsReceptors, Aryl HydrocarbonSequence HomologyXenopus laevisLigandsPolychlorinated DibenzodioxinsReceptors, Aryl HydrocarbonAHRAmphibiansAryl hydrocarbon receptorCaeciliansDioxin

Identifiers

PMID32858041
PMCPMC7771225
OpenAlexW3080254622

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.