Evidence map›Paper›PMID 32857918›Full record

ArticleCancer medicine2020

Impact of genetic alterations on outcomes of patients with stage I nonsmall cell lung cancer: An analysis of the cancer genome atlas data.

Song Xu, Yanye Wang, Fan Ren, Xiongfei Li, Dian Ren, Ming Dong, Gang Chen, Zuoqing Song, Jun Chen

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 17 citations in OpenAlex.

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  14. Genomic landscape and prognosis of patients withAnnals of translational medicine · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Song XuDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.ORCID 0000-0001-6153-387X
Yanye WangDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Fan RenDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Xiongfei LiDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Dian RenDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Ming DongDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Gang ChenDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Zuoqing SongDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.
Jun ChenDepartment of Lung Cancer Surgery, Tianjin Medical University General Hospital, Tianjin, China.ORCID 0000-0002-2362-5359
Tianjin Medical University General Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe prognostic factors for early-stage nonsmall cell lung cancers (NSCLCs) are not well defined. This study aimed to investigate the effect of highly frequent mutations on the outcomes patients with early-stage NSCLC, particularly those with surgically resected stage I disease.

methodsThe Cancer Genome Atlas (TCGA) datasets for Lung Adenocarcinoma (LUAD), Lung Squamous Cell Carcinoma (LUSC), and Pan-Lung Cancer (PLC) were accessed via cBioportal and searched to identify patients with stage I NSCLC. We identified candidate genes with a high (>10%) frequency of mutations and copy-number alterations and examined their effect on overall survival (OS) and disease-free survival (DFS). The details of clinicopathologic features were analyzed with the Fisher's exact, Mann-Whitney U test and Cox regression analysis. Survival was analyzed with Kaplan-Meier curves, and differences were compared with the log-rank and chi-square test.

resultsWe identified 408 patients with stage I NSCLC from the PLC dataset. Of the 41 candidate genes with high-frequency mutation rates, six genes were significantly associated with OS: TP53, LPP, MAP3K13, FGF12, BCL6, and TP63. Further stratified analysis in PLC, LUAD, and LUSC datasets, we only identified that TP53 was significantly associated with OS in patients with surgically resected stage I lung adenocarcinoma.

conclusionsTP53 mutations are potentially markers of poor prognosis for stage I lung adenocarcinoma patients. The mutation status of this gene may contribute to clinical decision-making with respect to selecting patients who may benefit from adjuvant therapy.

Indexed as

Biomarkers, TumorGenetic VariationAgedAllelesCarcinoma, Non-Small-Cell LungDNA Mutational AnalysisFemaleGene FrequencyGenomicsHumansLung NeoplasmsMaleMiddle AgedMutationNeoplasm StagingPrognosisBiomarkers, TumorTP53 protein, humanTumor Suppressor Protein p53databaseearly stagegenomicslung cancersurgery

Identifiers

PMID32857918
PMCPMC7571826
OpenAlexW3082538053

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.