Evidence map›Paper›PMID 32856707›Full record

Observational studyClinical infectious diseases : an official publication of the Infectious Diseases Society of America2021

Viral Dynamics and Immune Correlates of Coronavirus Disease 2019 (COVID-19) Severity.

Barnaby E Young, Sean W X Ong, Lisa F P Ng, Danielle E Anderson, Wan Ni Chia, Po Ying Chia, Li Wei Ang, Tze-Minn Mak, Shirin Kalimuddin, Louis Yi Ann Chai and 20 more

Open access · bronzeAbstract readObservational Study
In one paragraph

Observational study in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed, 5 pooled it
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 5 syntheses or guidelines pooled it, 228 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Guideline
  6. Review
  7. Article
  8. Article
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  16. Article
  17. Article
  18. COVID-19 in organ donors: An organ procurement organization perspective.Transplant infectious disease : an official journal of the Transplantation Society · 2024
    Article
  19. SARS-CoV-2 Viral Replication Persists in the Human Lung for Several Weeks after Symptom Onset.American journal of respiratory and critical care medicine · 2024
    Article
  20. Review

59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 11 institutions in 1 country.

Barnaby E YoungNational Centre for Infectious Diseases, Singapore.
Sean W X OngNational Centre for Infectious Diseases, Singapore.ORCID 0000-0002-8570-436X
Lisa F P NgInfection Diseases Horizontal Technology Centre (ID HTC), Agency for Science, Technology, and Research, Singapore.
Danielle E AndersonDuke-NUS Medical School, Singapore.
Wan Ni ChiaDuke-NUS Medical School, Singapore.
Po Ying ChiaNational Centre for Infectious Diseases, Singapore.
Li Wei AngNational Centre for Infectious Diseases, Singapore.
Tze-Minn MakNational Centre for Infectious Diseases, Singapore.
Shirin KalimuddinDuke-NUS Medical School, Singapore.
Louis Yi Ann ChaiNational University Health System, Singapore.
Surinder PadaNg Teng Fong General Hospital, Singapore.
Seow Yen TanChangi General Hospital, Singapore.
Louisa SunAlexandra Hospital, Singapore.
Purnima ParthasarathyKhoo Teck Puat Hospital, Singapore.
Siew-Wai FongInfection Diseases Horizontal Technology Centre (ID HTC), Agency for Science, Technology, and Research, Singapore.
Yi-Hao ChanInfection Diseases Horizontal Technology Centre (ID HTC), Agency for Science, Technology, and Research, Singapore.
Chee Wah TanSingapore Immunology Network, Agency for Science, Technology, and Research, Singapore.
Bernett LeeSingapore Immunology Network, Agency for Science, Technology, and Research, Singapore.
Olaf RötzschkeSingapore Immunology Network, Agency for Science, Technology, and Research, Singapore.
Ying DingNational Centre for Infectious Diseases, Singapore.
Paul TambyahNational University Health System, Singapore.
Jenny G H LowDuke-NUS Medical School, Singapore.
Lin CuiNational Centre for Infectious Diseases, Singapore.
Timothy BarkhamTan Tock Seng Hospital, Singapore.
Raymond Tzer Pin LinNational Centre for Infectious Diseases, Singapore.
Yee-Sin LeoNational Centre for Infectious Diseases, Singapore.
Laurent ReniaInfection Diseases Horizontal Technology Centre (ID HTC), Agency for Science, Technology, and Research, Singapore.
Lin-Fa WangDuke-NUS Medical School, Singapore.ORCID 0000-0003-2752-0535
David Chien LyeNational Centre for Infectious Diseases, Singapore.
Singapore 2019 Novel Coronavirus Outbreak Research Team
Agency for Science, Technology and Research · SGDuke-NUS Medical School · SGNational Centre for Infectious Diseases · SGNational University of Singapore · SGChangi General Hospital · SGNanyang Technological University · SGSingapore General Hospital · SGNg Teng Fong General Hospital · SGAlexandra Hospital · SGKhoo Teck Puat Hospital · SGTan Tock Seng Hospital · SG

Funding

Singapore Immunology NetworkSingapore National Medical Research Council COVID-19 Research Fund COVID19RF-001
6 · The paper itself

Abstract

backgroundKey knowledge gaps remain in the understanding of viral dynamics and immune response of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection.

methodsWe evaluated these characteristics and established their association with clinical severity in a prospective observational cohort study of 100 patients with PCR-confirmed SARS-CoV-2 infection (mean age, 46 years; 56% male; 38% with comorbidities). Respiratory samples (n = 74) were collected for viral culture, serum samples for measurement of IgM/IgG levels (n = 30), and plasma samples for levels of inflammatory cytokines and chemokines (n = 81). Disease severity was correlated with results from viral culture, serologic testing, and immune markers.

resultsFifty-seven (57%) patients developed viral pneumonia, of whom 20 (20%) required supplemental oxygen, including 12 (12%) with invasive mechanical ventilation. Viral culture from respiratory samples was positive for 19 of 74 patients (26%). No virus was isolated when the PCR cycle threshold (Ct) value was >30 or >14 days after symptom onset. Seroconversion occurred at a median (IQR) of 12.5 (9-18) days for IgM and 15.0 (12-20) days for IgG; 54/62 patients (87.1%) sampled at day 14 or later seroconverted. Severe infections were associated with earlier seroconversion and higher peak IgM and IgG levels. Levels of IP-10, HGF, IL-6, MCP-1, MIP-1α, IL-12p70, IL-18, VEGF-A, PDGF-BB, and IL-1RA significantly correlated with disease severity.

conclusionsWe found virus viability was associated with lower PCR Ct value in early illness. A stronger antibody response was associated with disease severity. The overactive proinflammatory immune signatures offer targets for host-directed immunotherapy, which should be evaluated in randomized controlled trials.

Indexed as

COVID-19Pneumonia, ViralAntibodies, ViralFemaleHumansImmunoglobulin MMaleMiddle AgedProspective StudiesSARS-CoV-2SeroconversionAntibodies, ViralImmunoglobulin MCOVID-19cytokinesimmunologyserologyviral culture

Identifiers

PMID32856707
PMCPMC7499509
OpenAlexW3081052435

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.