Evidence map›Paper›PMID 32855333›Full record

ArticleScience (New York, N.Y.)2020

Diverse enzymatic activities mediate antiviral immunity in prokaryotes.

Linyi Gao, Han Altae-Tran, Francisca Böhning, Kira S Makarova, Michael Segel, Jonathan L Schmid-Burgk, Jeremy Koob, Yuri I Wolf, Eugene V Koonin, Feng Zhang

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 400 papers.

0numbers the graph read from it
0cells of the map it votes in
400citing papers in PubMed
46.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

400 citing papers in PubMed, 620 citations in OpenAlex.

  1. Article
  2. Molecular control of bacterial immunity.Nature structural & molecular biology · 2026
    Review
  3. Characterization of defensome genes and mobile genetic Elements in different types of pasture soil agroecosystems from the Brazilian Amazon.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
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340 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Linyi GaoHoward Hughes Medical Institute, Cambridge, MA 02139, USA.ORCID 0000-0002-3579-0327
Han Altae-TranHoward Hughes Medical Institute, Cambridge, MA 02139, USA.ORCID 0000-0003-1083-4802
Francisca BöhningHoward Hughes Medical Institute, Cambridge, MA 02139, USA.ORCID 0000-0002-7561-5005
Kira S MakarovaNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.ORCID 0000-0002-8174-2844
Michael SegelHoward Hughes Medical Institute, Cambridge, MA 02139, USA.
Jonathan L Schmid-BurgkHoward Hughes Medical Institute, Cambridge, MA 02139, USA.ORCID 0000-0003-0988-2487
Jeremy KoobHoward Hughes Medical Institute, Cambridge, MA 02139, USA.ORCID 0000-0002-2777-532X
Yuri I WolfNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.ORCID 0000-0002-0247-8708
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.ORCID 0000-0003-3943-8299
Feng ZhangHoward Hughes Medical Institute, Cambridge, MA 02139, USA. zhang@broadinstitute.org.ORCID 0000-0003-0178-7995
Broad Institute · USNational Institutes of Health · US

Funding

Programmable RNA-targeting toolsR01HG009761 · NHGRI · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2017 to 2024
$7.5M
Exploration of Diverse Mobile Genetic Elements for Precision Genome ManipulationDP1HL141201 · NHLBI · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2017 to 2021
$6.2M
Massively-parallel functional interrogation of psychiatric geneticsR01MH110049 · NIMH · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2015 to 2019
$5.5M
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG009761NHLBI NIH HHS DP1 HL141201NIMH NIH HHS R01 MH110049
6 · The paper itself

Abstract

Bacteria and archaea are frequently attacked by viruses and other mobile genetic elements and rely on dedicated antiviral defense systems, such as restriction endonucleases and CRISPR, to survive. The enormous diversity of viruses suggests that more types of defense systems exist than are currently known. By systematic defense gene prediction and heterologous reconstitution, here we discover 29 widespread antiviral gene cassettes, collectively present in 32% of all sequenced bacterial and archaeal genomes, that mediate protection against specific bacteriophages. These systems incorporate enzymatic activities not previously implicated in antiviral defense, including RNA editing and retron satellite DNA synthesis. In addition, we computationally predict a diverse set of other putative defense genes that remain to be characterized. These results highlight an immense array of molecular functions that microbes use against viruses.

Indexed as

CRISPR-Cas SystemsRNA EditingAdenosine DeaminaseArchaeaArchaeal ProteinsArchaeal VirusesBacteriaBacterial ProteinsBacteriophagesGenes, ArchaealGenes, BacterialProtein DomainsAdenosine DeaminaseArchaeal ProteinsBacterial Proteins

Identifiers

PMID32855333
PMCPMC7985843
OpenAlexW3081228941

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.