Evidence map›Paper›PMID 32855272›Full record

ArticleLife science alliance2020

An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR.

Shih-Hsing Leir, Shiyi Yin, Jenny L Kerschner, Wilmel Cosme, Ann Harris

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 77 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Considerations for early life genetic therapies in cystic fibrosis.American journal of physiology. Lung cellular and molecular physiology · 2026
    Review
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  19. A single cell atlas of the mouse seminal vesicle.bioRxiv : the preprint server for biology · 2024
    Article
  20. Functional Consequences of CFTR Interactions in Cystic Fibrosis.International journal of molecular sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shih-Hsing LeirDepartment of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, and Case Comprehensive Cancer Center, Cleveland, OH, USA.ORCID 0000-0001-9524-3379
Shiyi YinDepartment of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, and Case Comprehensive Cancer Center, Cleveland, OH, USA.ORCID 0000-0003-4366-2189
Jenny L KerschnerDepartment of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, and Case Comprehensive Cancer Center, Cleveland, OH, USA.ORCID 0000-0002-1980-2543
Wilmel CosmeDepartment of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, and Case Comprehensive Cancer Center, Cleveland, OH, USA.
Ann HarrisDepartment of Genetics and Genome Sciences, Case Western Reserve University School of Medicine, and Case Comprehensive Cancer Center, Cleveland, OH, USA ann.harris@case.edu.ORCID 0000-0002-6541-2546
Case Comprehensive Cancer Center

Funding

Tissue-specific regulation of a gene essential for normal airway epitheliaR01HL094585 · NHLBI · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI HARRIS, ANN · 2009 to 2020
$2.9M
Transcriptional Networks Regulating Luminal Environment in the EpididymisR01HD068901 · NICHD · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI HARRIS, ANN · 2011 to 2023
$2.8M
CYTO VISION WORKSTATION FOR USE IN MULTI-USER FACILITY: CYSTIC FIBROSISS10RR021228 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI CONRAD, PATRICIA A · 2005 to 2005
$178k
NCRR NIH HHS S10 RR021228NHLBI NIH HHS R01 HL094585NICHD NIH HHS R01 HD068901
6 · The paper itself

Abstract

Spermatozoa released from the testis are unable to fertilize an egg without a coordinated process of maturation in the lumen of the epididymis. Relatively little is known about the molecular events that integrate this critical progression along the male genital ducts in man. Here, we use single cell RNA-sequencing to construct an atlas of the human proximal epididymis. We find that the CFTR, which is pivotal in normal epididymis fluid transport, is most abundant in surface epithelial cells in the efferent ducts and in rare clear cells in the caput epididymis, suggesting region-specific functional properties. We reveal transcriptional signatures for multiple cell clusters, which identify the individual roles of principal, apical, narrow, basal, clear, halo, and stromal cells in the epididymis. A marked cell type-specific distribution of function is seen along the duct with local specialization of individual cell types integrating processes of sperm maturation.

Indexed as

AdultCystic Fibrosis Transmembrane Conductance RegulatorEpididymisEpithelial CellsEpitheliumGenitalia, MaleHumansMaleMiddle AgedSequence Analysis, RNASingle-Cell AnalysisSpermatozoaSperm MaturationTestisCFTR protein, humanCystic Fibrosis Transmembrane Conductance Regulator

Identifiers

PMID32855272
PMCPMC7471510
OpenAlexW3082596922

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.