Evidence map›Paper›PMID 32854679›Full record

ArticleBMC biotechnology2020

Establishing a sensitive fluorescence-based quantification method for cyclic nucleotides.

Nadine Gruteser, Viktoria Kohlhas, Sabine Balfanz, Arne Franzen, Anne Günther, Andreas Offenhäusser, Frank Müller, Viacheslav Nikolaev, Martin J Lohse, Arnd Baumann

Open access · goldAbstract read
In one paragraph

Article in BMC biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Nadine GruteserInstitute of Biological Information Processing (Molecular and Cellular Physiology, IBI-1), Forschungszentrum Jülich, 52428, Jülich, Germany.
Viktoria KohlhasInstitute of Biological Information Processing (Molecular and Cellular Physiology, IBI-1), Forschungszentrum Jülich, 52428, Jülich, Germany.
Sabine BalfanzInstitute of Biological Information Processing (Molecular and Cellular Physiology, IBI-1), Forschungszentrum Jülich, 52428, Jülich, Germany.
Arne FranzenInstitute of Biological Information Processing (Molecular and Cellular Physiology, IBI-1), Forschungszentrum Jülich, 52428, Jülich, Germany.
Anne GüntherInstitute of Biological Information Processing (Molecular and Cellular Physiology, IBI-1), Forschungszentrum Jülich, 52428, Jülich, Germany.
Andreas OffenhäusserInstitute of Biological Information Processing (Bioelectronics, IBI-3), Forschungszentrum Jülich, 52428, Jülich, Germany.
Frank MüllerInstitute of Biological Information Processing (Molecular and Cellular Physiology, IBI-1), Forschungszentrum Jülich, 52428, Jülich, Germany.
Viacheslav NikolaevInstitute of Experimental Cardiovascular Research, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.
Martin J LohseInstitute of Pharmacology and Toxicology, University of Würzburg, 97078, Würzburg, Germany.
Arnd BaumannInstitute of Biological Information Processing (Molecular and Cellular Physiology, IBI-1), Forschungszentrum Jülich, 52428, Jülich, Germany. a.baumann@fz-juelich.de.ORCID 0000-0001-9456-7275
Forschungszentrum Jülich · DEMax Delbrück Center · DEUniversität Hamburg · DE

Funding

Bundesministerium für Bildung und Forschung (DE) Molecular Interaction Engineering, FKZ 031A095AGerman Federal Ministry of Education and Research (BMBF) Molecular Interaction Engineering, FKZ 031A095A
6 · The paper itself

Abstract

backgroundApproximately 40% of prescribed drugs exert their activity via GTP-binding protein-coupled receptors (GPCRs). Once activated, these receptors cause transient changes in the concentration of second messengers, e.g., cyclic adenosine 3',5'-monophosphate (cAMP). Specific and efficacious genetically encoded biosensors have been developed to monitor cAMP fluctuations with high spatial and temporal resolution in living cells or tissue. A well characterized biosensor for cAMP is the Förster resonance energy transfer (FRET)-based Epac1-camps protein. Pharmacological characterization of newly developed ligands acting at GPCRs often includes numerical quantification of the second messenger amount that was produced.

resultsTo quantify cellular cAMP concentrations, we bacterially over-expressed and purified Epac1-camps and applied the purified protein in a cell-free detection assay for cAMP in a multi-well format. We found that the biosensor can detect as little as 0.15 pmol of cAMP, and that the sensitivity is not impaired by non-physiological salt concentrations or pH values. Notably, the assay tolerated desiccation and storage of the protein without affecting Epac1-camps cyclic nucleotide sensitivity.

conclusionsWe found that determination cAMP in lysates obtained from cell assays or tissue samples by purified Epac1-camps is a robust, fast, and sensitive assay suitable for routine and high throughput analyses.

Indexed as

FluorescenceNucleotides, CyclicBiosensing TechniquesCell Culture TechniquesCloning, MolecularCyclic AMPEscherichia coliFluorescence Resonance Energy TransferGuanine Nucleotide Exchange FactorsHydrogen-Ion ConcentrationReceptors, G-Protein-CoupledRecombinant ProteinsCyclic AMPGuanine Nucleotide Exchange FactorsNucleotides, CyclicRAPGEF3 protein, humanReceptors, G-Protein-CoupledRecombinant ProteinsCell-based assayCyclic nucleotide quantificationEpac1-campsOptogenetic sensorSignaling

Identifiers

PMID32854679
PMCPMC7450941
OpenAlexW3082679160

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.