Evidence map›Paper›PMID 32853198›Full record

ArticlePLoS computational biology2020

Ten simple rules to increase computational skills among biologists with Code Clubs.

Ada K Hagan, Nicholas A Lesniak, Marcy J Balunas, Lucas Bishop, William L Close, Matthew D Doherty, Amanda G Elmore, Kaitlin J Flynn, Geoffrey D Hannigan, Charlie C Koumpouras and 10 more

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Improving bioinformatics software quality through teamwork.Bioinformatics (Oxford, England) · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Towards readable code in neuroscience.Nature reviews. Neuroscience · 2021
    Article
  9. Bridging the Python Training Gap for Bioscientists in Brazil: Improvements and Challenges.Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 2 institutions in 1 country.

Ada K HaganDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0001-8481-1457
Nicholas A LesniakDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0001-9359-5194
Marcy J BalunasDivision of Medicinal Chemistry, Department of Pharmaceutical Sciences, University of Connecticut, Storrs, Connecticut, United States of America.ORCID 0000-0003-2374-4048
Lucas BishopDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0001-5829-6754
William L CloseDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0001-5284-5521
Matthew D DohertyDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0003-4782-1802
Amanda G ElmoreDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.
Kaitlin J FlynnDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0002-8248-1631
Geoffrey D HanniganDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.
Charlie C KoumpourasDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.
Matthew L JeniorDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0003-1884-3543
Ariangela J KozikDepartment of Internal Medicine, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0003-2322-4085
Kathryn McBrideDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.
Samara B RifkinDepartment of Internal Medicine, University of Michigan, Ann Arbor, Michigan, United States of America.
Joshua M A StoughDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0003-3488-4169
Kelly L SovacoolDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0003-3283-829X
Marc A SzeDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0002-3532-9653
Sarah TomkovichDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0003-1638-5307
Begum D TopcuogluDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0003-3140-537X
Patrick D SchlossDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0002-6935-4275
University of Michigan · USUniversity of Connecticut · US

Funding

PULMONARY CELLULAR AND MOLECULAR BIOLOGY TRAININGT32HL007749 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Robert Pickett Dickson · 1993 to 2026
$19.9M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
Development of reproducible informatics skills among microbiome researchersR25GM116149 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHLOSS, PATRICK DAVID · 2015 to 2016
$148k
NHLBI NIH HHS T32 HL007749NIGMS NIH HHS R25 GM116149NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Computational BiologyData ScienceGoalsHumansRespect

Identifiers

PMID32853198
PMCPMC7451508
OpenAlexW3081305380

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.