Evidence map›Paper›PMID 32851465›Full record

ArticleBiotechnology letters2021

Directed evolution of the B. subtilis nitroreductase YfkO improves activation of the PET-capable probe SN33623 and CB1954 prodrug.

Michelle H Rich, Abigail V Sharrock, Amir Ashoorzadeh, Adam V Patterson, Jeff B Smaill, David F Ackerley

Abstract read
PubMed Publisher
In one paragraph

Article in Biotechnology letters, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Michelle H RichSchool of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand.
Abigail V SharrockSchool of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand.
Amir AshoorzadehAuckland Cancer Society Research Centre, University of Auckland, Auckland, New Zealand.
Adam V PattersonAuckland Cancer Society Research Centre, University of Auckland, Auckland, New Zealand.
Jeff B SmaillAuckland Cancer Society Research Centre, University of Auckland, Auckland, New Zealand.
David F AckerleySchool of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand. david.ackerley@vuw.ac.nz.ORCID http://orcid.org/0000-0002-6188-9902
University of Auckland · NZVictoria University of Wellington · NZUniversity College Dublin · IE

Funding

Cancer Society of New Zealand 13/01Genesis Oncology Trust GOT-1252-RPG
6 · The paper itself

Abstract

objectivesTo use directed evolution to improve YfkO-mediated reduction of the 5-nitroimidazole PET-capable probe SN33623 without impairing conversion of the anti-cancer prodrug CB1954.

resultsTwo iterations of error-prone PCR, purifying selection, and FACS sorting in a DNA damage quantifying GFP reporter strain were used to identify three YfkO variants able to sensitize E. coli host cells to at least 2.4-fold lower concentrations of SN33623 than the native enzyme. Two of these variants were able to be purified in a functional form, and in vitro assays revealed these were twofold and fourfold improved in k

conclusionsThe enhanced activation of the PET imaging probe SN33623 and CB1954 prodrug exhibited by the lead evolved variant of YfkO offers prospects for improved enzyme-prodrug therapy.

Indexed as

Bacillus subtilisAntineoplastic AgentsAziridinesBacterial ProteinsDirected Molecular EvolutionEnzyme TherapyNitroimidazolesNitroreductasesAntineoplastic AgentsAziridinesBacterial ProteinsNitroimidazolesNitroreductasesSN33623tretazicarCancer gene therapyError-prone PCRGDEPTNiclosamideNitroimidazoleNitroreductase

Identifiers

PMID32851465
OpenAlexW3080765090

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.