Evidence map›Paper›PMID 32848229›Full record

ArticleGenes and immunity2020

Identification of novel loci controlling inflammatory bowel disease susceptibility utilizing the genetic diversity of wild-derived mice.

Karolyn G Lahue, Montana K Lara, Alisha A Linton, Brigitte Lavoie, Qian Fang, Mahalia M McGill, Jessica W Crothers, Cory Teuscher, Gary M Mawe, Anna L Tyler and 2 more

Open access · greenAbstract read
In one paragraph

Article in Genes and immunity, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Colonization byFrontiers in immunology · 2025
    Article
  3. Recent advances in acid sensing by G protein coupled receptors.Pflugers Archiv : European journal of physiology · 2024
    Review
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  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Karolyn G LahueDepartment of Biomedical and Health Sciences, University of Vermont, Burlington, VT, 05405, USA.
Montana K LaraDepartment of Neurological Sciences, University of Vermont, Burlington, VT, 05405, USA.ORCID http://orcid.org/0000-0001-5810-4425
Alisha A LintonDepartment of Neurological Sciences, University of Vermont, Burlington, VT, 05405, USA.
Brigitte LavoieDepartment of Neurological Sciences, University of Vermont, Burlington, VT, 05405, USA.
Qian FangDepartment of Medicine, University of Vermont, Burlington, VT, 05405, USA.
Mahalia M McGillDepartment of Biomedical and Health Sciences, University of Vermont, Burlington, VT, 05405, USA.
Jessica W CrothersDepartment of Pathology and Laboratory Medicine, University of Vermont, Burlington, VT, 05405, USA.ORCID http://orcid.org/0000-0003-4594-5051
Cory TeuscherDepartment of Medicine, University of Vermont, Burlington, VT, 05405, USA.
Gary M MaweDepartment of Neurological Sciences, University of Vermont, Burlington, VT, 05405, USA.
Anna L TylerThe Jackson Laboratory, 600 Main St., Bar Harbor, ME, 04609, USA.
J Matthew MahoneyDepartment of Neurological Sciences, University of Vermont, Burlington, VT, 05405, USA.
Dimitry N KrementsovDepartment of Biomedical and Health Sciences, University of Vermont, Burlington, VT, 05405, USA. dkrement@uvm.edu.ORCID http://orcid.org/0000-0003-2709-7466
University of Vermont · USJackson Laboratory · US

Funding

Zhao - Proj 2P20GM130454 · NIGMS · DARTMOUTH COLLEGE · PI Li Song · 2019 to 2026
$27.2M
Vermont Immunobioloigy/ Infectious Diseases CenterP20GM103496 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C · 2012 to 2015
$8.7M
Vermont Immunology/Infectious Diseases CenterP30GM118228 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C · 2016 to 2021
$6.8M
Autoimmune mechanisms of gastrointestinal dysmotility in multiple sclerosisR01DK113800 · NIDDK · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI MAWE, GARY M · 2017 to 2020
$1.8M
Interactions Between Host Genetics and the Gut Microbiome in CNS AutoimmunityR01NS097596 · NINDS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI KREMENTSOV, DIMITRY N · 2017 to 2021
$1.7M
Next generation systems analysis of pathogenetic mechanisms underlying CNS autoimmunityR21AI145306 · NIAID · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI KREMENTSOV, DIMITRY N · 2019 to 2020
$429k
Inferring Molecular Mechanisms of Complex Disease by Integrating Patterns of Epistasis with Functional Genomic NetworksR21LM012615 · NLM · JACKSON LABORATORY · PI MAHONEY, JOHN MATTHEW, TYLER, ANNA L. · 2018 to 2019
$423k
NIAID NIH HHS R21 AI145306NIDDK NIH HHS R01 DK113800NIGMS NIH HHS P20 GM103496NIGMS NIH HHS P30 GM118228NINDS NIH HHS R01 NS097596NLM NIH HHS R21 LM012615
6 · The paper itself

Abstract

Inflammatory bowel disease (IBD) is a complex disorder that imposes a growing health burden. Multiple genetic associations have been identified in IBD, but the mechanisms underlying many of these associations are poorly understood. Animal models are needed to bridge this gap, but conventional laboratory mouse strains lack the genetic diversity of human populations. To more accurately model human genetic diversity, we utilized a panel of chromosome (Chr) substitution strains, carrying chromosomes from the wild-derived and genetically divergent PWD/PhJ (PWD) strain on the commonly used C57BL/6J (B6) background, as well as their parental B6 and PWD strains. Two models of IBD were used, TNBS- and DSS-induced colitis. Compared with B6 mice, PWD mice were highly susceptible to TNBS-induced colitis, but resistant to DSS-induced colitis. Using consomic mice, we identified several PWD-derived loci that exhibited profound effects on IBD susceptibility. The most pronounced of these were loci on Chr1 and Chr2, which yielded high susceptibility in both IBD models, each acting at distinct phases of the disease. Leveraging transcriptomic data from B6 and PWD immune cells, together with a machine learning approach incorporating human IBD genetic associations, we identified lead candidate genes, including Itga4, Pip4k2a, Lcn10, Lgmn, and Gpr65.

Indexed as

Genetic LociGenetic Predisposition to DiseaseAnimalsColitis, UlcerativeFemaleMaleMiceMice, Inbred C57BLPolymorphism, GeneticTranscriptome

Identifiers

PMID32848229
PMCPMC7657953
OpenAlexW3080515836

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.