Evidence map›Paper›PMID 32848060›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Transcriptome-wide analysis of PGC-1α-binding RNAs identifies genes linked to glucagon metabolic action.

Clint D J Tavares, Stefan Aigner, Kfir Sharabi, Shashank Sathe, Beste Mutlu, Gene W Yeo, Pere Puigserver

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
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  12. Mechanisms of mitochondrial respiratory adaptation.Nature reviews. Molecular cell biology · 2022
    Review
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  15. RNA-bound PGC-1α controls gene expression in liquid-like nuclear condensates.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Review
  17. Transcriptome-wide analysis of PGC-1α-binding RNAs identifies genes linked to glucagon metabolic action.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Clint D J TavaresDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215.
Stefan AignerDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.
Kfir SharabiDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215.
Shashank SatheDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.
Beste MutluDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215.ORCID 0000-0003-3258-0452
Gene W YeoDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093; geneyeo@ucsd.edu pere_puigserver@dfci.harvard.edu.
Pere PuigserverDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215; geneyeo@ucsd.edu pere_puigserver@dfci.harvard.edu.
Harvard University · USUniversity of California San Diego · US

Funding

Functional RNA elements in the human genomeR01HG004659 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett, Eugene Wei-Ming Yeo · 2008 to 2026
$12.4M
A Comprehensive Functional Map of Human Protein-RNA InteractionsU41HG009889 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2018 to 2021
$9.4M
A comprehensive binding and functional map of human RNA-binding proteinsU24HG009889 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R., YEO, EUGENE WEI-MING · 2022 to 2025
$5.5M
Transcriptional Control of Mitochondrial Bioenergetic FunctionR01DK081418 · NIDDK · DANA-FARBER CANCER INST · PI PUIGSERVER, PERE · 2008 to 2021
$5.2M
Insulin Signaling and Metabolic Effects through CLK2 KinaseR01DK089883 · NIDDK · DANA-FARBER CANCER INST · PI PUIGSERVER, PERE · 2011 to 2020
$3.8M
Remodeling mitochondrial cristae to rescue bioenergetic defects in mitochondrial diseaseF32GM136019 · NIGMS · DANA-FARBER CANCER INST · PI MUTLU, BESTE · 2020 to 2022
$154k
NHGRI NIH HHS R01 HG004659NHGRI NIH HHS U24 HG009889NHGRI NIH HHS U41 HG009889NIDDK NIH HHS R01 DK081418NIDDK NIH HHS R01 DK089883
6 · The paper itself

Abstract

The peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1α) is a transcriptional coactivator that controls expression of metabolic/energetic genes, programming cellular responses to nutrient and environmental adaptations such as fasting, cold, or exercise. Unlike other coactivators, PGC-1α contains protein domains involved in RNA regulation such as serine/arginine (SR) and RNA recognition motifs (RRMs). However, the RNA targets of PGC-1α and how they pertain to metabolism are unknown. To address this, we performed enhanced ultraviolet (UV) cross-linking and immunoprecipitation followed by sequencing (eCLIP-seq) in primary hepatocytes induced with glucagon. A large fraction of RNAs bound to PGC-1α were intronic sequences of genes involved in transcriptional, signaling, or metabolic function linked to glucagon and fasting responses, but were not the canonical direct transcriptional PGC-1α targets such as OXPHOS or gluconeogenic genes. Among the top-scoring RNA sequences bound to PGC-1α were

Indexed as

Adenosine TriphosphateAnimalsCalcium-Binding ProteinsCells, CulturedGene Expression ProfilingGene Expression RegulationGlucagonGluconeogenesisGlucoseGuanosine TriphosphateHepatocytesLiverMaleMetabolomicsMiceMice, Inbred C57BLAdenosine TriphosphateCalcium-Binding ProteinsGlucagonGlucoseGuanosine TriphosphateMitochondrial Membrane Transport ProteinsPeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaPpargc1a protein, mouseSlc25a25 protein, mouseglucagonlivermitochondriaPGC-1αRNA binding

Identifiers

PMID32848060
PMCPMC7486754
OpenAlexW3081028173

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.