Evidence map›Paper›PMID 32845612›Full record

ArticleBiochemistry2020

Structural Insights into How Protein Environments Tune the Spectroscopic Properties of a Noncanonical Amino Acid Fluorophore.

J Nathan Henderson, Chad R Simmons, Nour Eddine Fahmi, Joshua W Jeffs, Chad R Borges, Jeremy H Mills

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

J Nathan HendersonThe Biodesign Center for Molecular Design and Biomimetics, Arizona State University, Tempe, Arizona 85287, United States.
Chad R SimmonsThe Biodesign Center for Molecular Design and Biomimetics, Arizona State University, Tempe, Arizona 85287, United States.ORCID 0000-0002-2290-6132
Nour Eddine FahmiThe Biodesign Center for Molecular Design and Biomimetics, Arizona State University, Tempe, Arizona 85287, United States.
Joshua W JeffsThe Biodesign Virginia G. Piper Center for Personalized Diagnostics, Arizona State University, Tempe, Arizona 85287, United States.
Chad R BorgesThe Biodesign Virginia G. Piper Center for Personalized Diagnostics, Arizona State University, Tempe, Arizona 85287, United States.ORCID 0000-0002-8122-3438
Jeremy H MillsThe Biodesign Center for Molecular Design and Biomimetics, Arizona State University, Tempe, Arizona 85287, United States.ORCID 0000-0003-2017-1846
Arizona State University · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Expanding the fluorescent toolkit with non-canonical amino acidsR01GM136996 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI MILLS, JEREMY · 2020 to 2023
$1.4M
NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM136996
6 · The paper itself

Abstract

Genetically encoded fluorescent noncanonical amino acids (fNCAAs) could be used to develop novel fluorescent sensors of protein function. Previous efforts toward this goal have been limited by the lack of extensive physicochemical and structural characterizations of protein-based sensors containing fNCAAs. Here, we report the steady-state spectroscopic properties and first structural analyses of an fNCAA-containing Fab fragment of the 5c8 antibody, which binds human CD40L. A previously reported 5c8 variant in which the light chain residue Ile

Indexed as

Binding Sites, AntibodyFluorescenceAmino AcidsCD40 LigandCrystallography, X-RayFluorescent DyesHumansImmunoglobulin Fab FragmentsModels, MolecularProtein ConformationAmino AcidsCD40 LigandFluorescent DyesImmunoglobulin Fab Fragments

Identifiers

PMID32845612
PMCPMC7964926
OpenAlexW3080145010

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.