Evidence map›Paper›PMID 32845057›Full record

ArticleHuman brain mapping2020

A series of five population-specific Indian brain templates and atlases spanning ages 6-60 years.

Bharath Holla, Paul A Taylor, Daniel R Glen, John A Lee, Nilakshi Vaidya, Urvakhsh Meherwan Mehta, Ganesan Venkatasubramanian, Pramod Kumar Pal, Jitender Saini, Naren P Rao and 12 more

Open access · goldAbstract readValidation Study
In one paragraph

Article in Human brain mapping, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Country-level gender inequality is associated with structural differences in the brains of women and men.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Pooled it
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  4. Human development, inequality, and their associations with brain structure across 29 countries.European psychiatry : the journal of the Association of European Psychiatrists · 2025
    Article
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  7. Processing, evaluating, and understanding FMRI data with afni_proc.py.Imaging neuroscience (Cambridge, Mass.) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 9 institutions in 4 countries.

Bharath HollaNational Institute of Mental Health and Neuro Sciences, Bengaluru, India.ORCID 0000-0003-0999-1237
Paul A TaylorScientific and Statistical Computing Core, NIMH, NIH, Bethesda, Maryland, USA.ORCID 0000-0003-0488-6796
Daniel R GlenScientific and Statistical Computing Core, NIMH, NIH, Bethesda, Maryland, USA.ORCID 0000-0001-8456-5647
John A LeeScientific and Statistical Computing Core, NIMH, NIH, Bethesda, Maryland, USA.
Nilakshi VaidyaNational Institute of Mental Health and Neuro Sciences, Bengaluru, India.
Urvakhsh Meherwan MehtaNational Institute of Mental Health and Neuro Sciences, Bengaluru, India.
Ganesan VenkatasubramanianNational Institute of Mental Health and Neuro Sciences, Bengaluru, India.
Pramod Kumar PalNational Institute of Mental Health and Neuro Sciences, Bengaluru, India.
Jitender SainiNational Institute of Mental Health and Neuro Sciences, Bengaluru, India.
Naren P RaoNational Institute of Mental Health and Neuro Sciences, Bengaluru, India.
Chirag K AhujaPost Graduate Institute of Medical Education and Research, Chandigarh, India.
Rebecca KuriyanSt. John's Medical College and Research Institute, Bengaluru, India.
Murali KrishnaCSI Holdsworth Memorial Hospital, Mysore, India.
Debashish BasuPost Graduate Institute of Medical Education and Research, Chandigarh, India.
Kartik KalyanramRishi Valley Rural Health Centre, Madanapalle, India.
Amit ChakrabartiICMR-Regional Occupational Health Centre, Kolkata, India.
Dimitri Papadopoulos OrfanosNeuroSpin, CEA, Université Paris-Saclay, Paris, France.
Gareth J BarkerInstitute of Psychiatry, Psychology and Neuroscience (IoPPN), King's College London (KCL), London, UK.
Robert W CoxScientific and Statistical Computing Core, NIMH, NIH, Bethesda, Maryland, USA.
Gunter SchumannCentre for Population Neuroscience and Stratified Medicine (PONS), SGDP Centre, IoPPN, KCL, London, UK.
Rose Dawn BharathNational Institute of Mental Health and Neuro Sciences, Bengaluru, India.ORCID 0000-0002-7464-4250
Vivek BenegalNational Institute of Mental Health and Neuro Sciences, Bengaluru, India.ORCID 0000-0002-8896-9689
National Institute of Mental Health and Neurosciences · INCenter for Information Technology · USPost Graduate Institute of Medical Education and Research · INCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRKing's College London · GBKPMG (United Kingdom) · GBRegional Medical Research Centre · INSt.John's Medical College Hospital · INUniversity of Mysore · IN

Funding

Scientific and Statistical Computing CoreZICMH002888 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI TAYLOR, PAUL · 2009 to 2025
$30.9M
Understanding Obesity In Relation to the Built EnvironmentP20MD006899 · NIMHD · JACKSON STATE UNIVERSITY · PI ANTOINE-LAVIGNE, DONNA A · 2012 to 2016
$5.3M
A decentralized macro and micro gene-by-environment interaction analysis of substance use behavior and its brain biomarkers R01DA049238 · NIDA · GEORGIA STATE UNIVERSITY · PI CALHOUN, VINCE D, LIU, JINGYU · 2019 to 2023
$2.9M
CYTOKINE, LEUKOCYTE, ENDOTHELIUM ACTIVATION IN CEREBROVASCULAR DISEASEZ01NS002888 · NINDS · NEUROLOGICAL DISORDERS AND STROKE · PI DEGRABA, THOMAS J · 1993 to 2002
–
DBT/Wellcome Trust India Alliance IA/E/12/1/500755DBT/Wellcome Trust India Alliance IA/RTF/14/1/1002Department of Biotechnology (DBT), Government of India BT/PR14315/MED/30/474/2010Department of Biotechnology (DBT), Government of India BT/PR17316/MED/31/326/2015Department of Science and Technology (DST), Government of India DST/SJF/LSA-02/2014-15Department of Science and Technology (DST), Government of India SR/CSI/44/2008(5)EU Joint Programme - Neurodegenerative Disease Research MR/N027558/1H2020 European Research Council 695313Human Brain Project SGA 2 785907Human Brain Project SGA 3 945539ICMR (India)/MRC (UK) ICMR/MRC-UK/3/M/2015-NCD-IIntramural NIH HHS ZIC MH002888National Institute for Health Research PR-ST-0416-10004NIDA NIH HHS R01 DA049238NIMHD NIH HHS P20 MD006899Wellcome Trust
6 · The paper itself

Abstract

Anatomical brain templates are commonly used as references in neurological MRI studies, for bringing data into a common space for group-level statistics and coordinate reporting. Given the inherent variability in brain morphology across age and geography, it is important to have templates that are as representative as possible for both age and population. A representative-template increases the accuracy of alignment, decreases distortions as well as potential biases in final coordinate reports. In this study, we developed and validated a new set of T1w Indian brain templates (IBT) from a large number of brain scans (total n = 466) acquired across different locations and multiple 3T MRI scanners in India. A new tool in AFNI, make_template_dask.py, was created to efficiently make five age-specific IBTs (ages 6-60 years) as well as maximum probability map (MPM) atlases for each template; for each age-group's template-atlas pair, there is both a "population-average" and a "typical" version. Validation experiments on an independent Indian structural and functional-MRI dataset show the appropriateness of IBTs for spatial normalization of Indian brains. The results indicate significant structural differences when comparing the IBTs and MNI template, with these differences being maximal along the Anterior-Posterior and Inferior-Superior axes, but minimal Left-Right. For each age-group, the MPM brain atlases provide reasonably good representation of the native-space volumes in the IBT space, except in a few regions with high intersubject variability. These findings provide evidence to support the use of age and population-specific templates in human brain mapping studies.

Indexed as

AlgorithmsAtlases as TopicAdolescentAdultBrainChildFemaleHumansImage Processing, Computer-AssistedIndiaMagnetic Resonance ImagingMaleMiddle AgedNeuroimagingRetrospective StudiesYoung Adultbrain atlasesbrain templatemaximum probability mapMRI

Identifiers

PMID32845057
PMCPMC7670651
OpenAlexW3080871474

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.