Evidence map›Paper›PMID 32844748›Full record

ArticleeLife2020

Puromycin reactivity does not accurately localize translation at the subcellular level.

Syed Usman Enam, Boris Zinshteyn, Daniel H Goldman, Madeline Cassani, Nathan M Livingston, Geraldine Seydoux, Rachel Green

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 1 synthesis or guideline pooled it, 102 citations in OpenAlex.

  1. Pooled it
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  13. Self-renewal of neuronal mitochondria through asymmetric division.bioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Syed Usman Enam *Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID https://orcid.org/0000-0001-8976-0660
Boris Zinshteyn *Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID https://orcid.org/0000-0003-0103-3501
Daniel H Goldman *Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, United States.
Madeline CassaniDepartment of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, United States.
Nathan M LivingstonDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID http://orcid.org/0000-0003-4670-708X
Geraldine SeydouxDepartment of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID http://orcid.org/0000-0001-8257-0493
Rachel GreenDepartment of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, United States.ORCID https://orcid.org/0000-0001-9337-2003
Howard Hughes Medical Institute · USJohns Hopkins University · US

Funding

BIOCHEMISTRY, CELLULAR AND MOLECULAR BIOLOGY PROGRAMT32GM007445 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREEN, RACHEL · 1985 to 2021
$24.1M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Regulation of Germ Cell Fate During EmbryogenesisR37HD037047 · NICHD · JOHNS HOPKINS UNIVERSITY · PI SEYDOUX, GERALDINE CATHERINE JOELLE · 2016 to 2025
$3.8M
Molecular mechanisms of ribosome pausing and the cellular responseR37GM059425 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREEN, RACHEL · 2014 to 2023
$3.5M
Mechanisms for establishment and recognition of stop codon contextK99GM135450 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI ZINSHTEYN, BORIS · 2020 to 2020
$90k
Damon Runyon Cancer Research Foundation DRG-2250-16Damon Runyon Cancer Research Foundation DRG-2280-16NICHD NIH HHS R37 HD037047NIGMS NIH HHS K99 GM135450NIGMS NIH HHS R37 GM059425NIGMS NIH HHS T32 GM007445NIH HHS 2R37GM059425-14NIH HHS 5K99GM135450-02NIH HHS 5R37HD037047-20NIH HHS P40 OD010440NIH HHS T32 GM007445
6 · The paper itself

Abstract

Puromycin is a tyrosyl-tRNA mimic that blocks translation by labeling and releasing elongating polypeptide chains from translating ribosomes. Puromycin has been used in molecular biology research for decades as a translation inhibitor. The development of puromycin antibodies and derivatized puromycin analogs has enabled the quantification of active translation in bulk and single-cell assays. More recently, in vivo puromycylation assays have become popular tools for localizing translating ribosomes in cells. These assays often use elongation inhibitors to purportedly inhibit the release of puromycin-labeled nascent peptides from ribosomes. Using in vitro and in vivo experiments in various eukaryotic systems, we demonstrate that, even in the presence of elongation inhibitors, puromycylated peptides are released and diffuse away from ribosomes. Puromycylation assays reveal subcellular sites, such as nuclei, where puromycylated peptides accumulate post-release and which do not necessarily coincide with sites of active translation. Our findings urge caution when interpreting puromycylation assays in vivo.

Indexed as

Cell NucleusProtein BiosynthesisProtein Synthesis InhibitorsPuromycinAnimalsCaenorhabditis elegansEmetinePeptidesRabbitsRibosomesRNA, TransferSingle-Cell AnalysisEmetinePeptidesProtein Synthesis InhibitorsPuromycinRNA, TransferbiochemistryC. eleganscell biologychemical biologyemetinehumanop-puropuromycinpuromycylationribosome

Identifiers

PMID32844748
PMCPMC7490009
OpenAlexW3080614974

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.