Evidence map›Paper›PMID 32844281›Full record

ArticleAnalytical and bioanalytical chemistry2020

Enhanced protocol for quantitative N-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)™.

Jaclyn Gowen Kalmar, Karen E Butler, Erin S Baker, David C Muddiman

Open access · greenAbstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. The Role of Clinical Glyco(proteo)mics in Precision Medicine.Molecular & cellular proteomics : MCP · 2023
    Article
  4. High-Throughput Glycomic Methods.Chemical reviews · 2022
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jaclyn Gowen KalmarDepartment of Chemistry, North Carolina State University, Raleigh, NC, 27695, USA.
Karen E ButlerDepartment of Chemistry, North Carolina State University, Raleigh, NC, 27695, USA.
Erin S BakerDepartment of Chemistry, North Carolina State University, Raleigh, NC, 27695, USA.
David C MuddimanDepartment of Chemistry, North Carolina State University, Raleigh, NC, 27695, USA. dcmuddim@ncsu.edu.
North Carolina State University · US

Funding

Leveraging Glycomics to Characterize a Molecular Signature of Alzheimer's DiseaseR56AG063885 · NIA · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI BAKER, ERIN S, MACCOSS, MICHAEL · 2019 to 2019
$786k
NIA NIH HHS R56 AG063885NIA NIH HHS R56AG063885
6 · The paper itself

Abstract

The analysis of N-linked glycans using liquid chromatography and mass spectrometry (LC-MS) presents significant challenges, particularly owing to their hydrophilic nature. To address these difficulties, a variety of derivatization methods have been developed to facilitate improved ionization and detection sensitivity. One such method, the Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)™ strategy for labeling glycans, has previously been utilized in the analysis of N- and O-linked glycans in biological samples. To assess the maximum sensitivity and separability of the INLIGHT™ preparation and analysis pipeline, several critical steps were investigated. First, recombinant and nonrecombinant sources of PNGase F were compared to assess variations in the released glycans. Second, modifications in the INLIGHT™ derivatization step were evaluated including temperature optimization, solvent composition changes, reaction condition length and tag concentration. Optimization of the modified method resulted in 20-100 times greater peak areas for the detected N-linked glycans in fetuin and horseradish peroxidase compared with the standard method. Furthermore, the identification of low-abundance glycans, such as (Fuc)

Indexed as

Chromatography, Reverse-PhaseFemaleFetuinsGlycomicsGlycosylationHumansMalePeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidasePolysaccharidesTandem Mass SpectrometryFetuinsPeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidasePolysaccharidesChromatographyGlycomicsHILICINLIGHT™N-linked glycansOrbitrapPGCReversed-phaseSample preparation

Identifiers

PMID32844281
PMCPMC7541788
OpenAlexW3080644342

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.