Evidence map›Paper›PMID 32843626›Full record

ArticleNature communications2020

Origin and cross-species transmission of bat coronaviruses in China.

Alice Latinne, Ben Hu, Kevin J Olival, Guangjian Zhu, Libiao Zhang, Hongying Li, Aleksei A Chmura, Hume E Field, Carlos Zambrana-Torrelio, Jonathan H Epstein and 5 more

RetractedOpen access · goldAbstract readRetracted Publication
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 213 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
213citing papers in PubMed, 3 pooled it
54.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

213 citing papers in PubMed, 3 syntheses or guidelines pooled it, 358 citations in OpenAlex.

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  18. Ecological monographs · 2025
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153 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 4 countries.

Alice Latinne *EcoHealth Alliance, New York, USA.ORCID http://orcid.org/0000-0003-1249-2025
Ben Hu *Key Laboratory of Special Pathogens And Biosafety, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan, China.
Kevin J OlivalEcoHealth Alliance, New York, USA.ORCID http://orcid.org/0000-0003-3211-1875
Guangjian ZhuEcoHealth Alliance, New York, USA.
Libiao ZhangGuangdong Institute of Applied Biological Resources, Guangdong Academy of Sciences, Guangzhou, China.
Hongying LiEcoHealth Alliance, New York, USA.ORCID http://orcid.org/0000-0002-5089-1134
Aleksei A ChmuraEcoHealth Alliance, New York, USA.ORCID http://orcid.org/0000-0001-5544-0431
Hume E FieldEcoHealth Alliance, New York, USA.ORCID http://orcid.org/0000-0002-4671-7002
Carlos Zambrana-TorrelioEcoHealth Alliance, New York, USA.ORCID http://orcid.org/0000-0002-5614-7496
Jonathan H EpsteinEcoHealth Alliance, New York, USA.ORCID http://orcid.org/0000-0002-1373-9301
Bei LiKey Laboratory of Special Pathogens And Biosafety, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan, China.
Wei ZhangKey Laboratory of Special Pathogens And Biosafety, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan, China.
Lin-Fa WangProgramme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore, Singapore.ORCID http://orcid.org/0000-0003-2752-0535
Zheng-Li ShiKey Laboratory of Special Pathogens And Biosafety, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan, China. zlshi@wh.iov.cn.ORCID http://orcid.org/0000-0001-8089-163X
Peter DaszakEcoHealth Alliance, New York, USA. daszak@ecohealthalliance.org.ORCID http://orcid.org/0000-0002-2046-5695
EcoHealth Alliance · USChinese Academy of Sciences · CNDuke-NUS Medical School · SGGuangdong Academy of Sciences · CNThe University of Queensland · AUWildlife Conservation Society · US

Funding

Understanding the Risk of Bat Coronavirus EmergenceR01AI110964 · NIAID · ECOHEALTH ALLIANCE, INC. · PI DASZAK, PETER · 2014 to 2023
$4.3M
NIAID NIH HHS R01 AI110964United States Agency for International Development (U.S. Agency for International Development) GHN-A-OO-09-00010-00U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI110964
6 · The paper itself

Abstract

Bats are presumed reservoirs of diverse coronaviruses (CoVs) including progenitors of Severe Acute Respiratory Syndrome (SARS)-CoV and SARS-CoV-2, the causative agent of COVID-19. However, the evolution and diversification of these coronaviruses remains poorly understood. Here we use a Bayesian statistical framework and a large sequence data set from bat-CoVs (including 630 novel CoV sequences) in China to study their macroevolution, cross-species transmission and dispersal. We find that host-switching occurs more frequently and across more distantly related host taxa in alpha- than beta-CoVs, and is more highly constrained by phylogenetic distance for beta-CoVs. We show that inter-family and -genus switching is most common in Rhinolophidae and the genus Rhinolophus. Our analyses identify the host taxa and geographic regions that define hotspots of CoV evolutionary diversity in China that could help target bat-CoV discovery for proactive zoonotic disease surveillance. Finally, we present a phylogenetic analysis suggesting a likely origin for SARS-CoV-2 in Rhinolophus spp. bats.

Indexed as

Evolution, MolecularAnimalsBayes TheoremBetacoronavirusBiodiversityChinaChiropteraCoronavirusCoronavirus InfectionsCOVID-19HumansPandemicsPhylogenyPhylogeographyPneumonia, ViralSARS-CoV-2

Identifiers

PMID32843626
PMCPMC7447761
OpenAlexW3080845626

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.