Evidence map›Paper›PMID 32842666›Full record

ArticleBiomolecules2020

Elucidating the Inhibitory Effect of Resveratrol and Its Structural Analogs on Selected Nucleotide-Related Enzymes.

Yifei Wu, Tze-Chen Hsieh, Joseph M Wu, Xiaoxiao Wang, Joshua S Christopher, Amanda H Pham, Justin David-Li Swaby, Lei Lou, Zhong-Ru Xie

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

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  12. Polyphenols as alternative treatments of COVID-19.Computational and structural biotechnology journal · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yifei WuComputational Drug Discovery Laboratory, School of Electrical and Computer Engineering, College of Engineering, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0002-3202-3368
Tze-Chen HsiehDepartment of Biochemistry & Molecular Biology, New York Medical College, Valhalla, NY 10595, USA.
Joseph M WuDepartment of Biochemistry & Molecular Biology, New York Medical College, Valhalla, NY 10595, USA.
Xiaoxiao WangDepartment of Biochemistry & Molecular Biology, New York Medical College, Valhalla, NY 10595, USA.ORCID 0000-0002-9913-680X
Joshua S ChristopherComputational Drug Discovery Laboratory, School of Electrical and Computer Engineering, College of Engineering, University of Georgia, Athens, GA 30602, USA.
Amanda H PhamComputational Drug Discovery Laboratory, School of Electrical and Computer Engineering, College of Engineering, University of Georgia, Athens, GA 30602, USA.
Justin David-Li SwabyComputational Drug Discovery Laboratory, School of Electrical and Computer Engineering, College of Engineering, University of Georgia, Athens, GA 30602, USA.
Lei LouComputational Drug Discovery Laboratory, School of Electrical and Computer Engineering, College of Engineering, University of Georgia, Athens, GA 30602, USA.
Zhong-Ru XieComputational Drug Discovery Laboratory, School of Electrical and Computer Engineering, College of Engineering, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0002-1539-5100
University of Georgia · USNew York Medical College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Resveratrol, the most widely studied natural phytochemical, has been shown to interact with different target proteins. Previous studies show that resveratrol binds and inhibits DNA polymerases and some other enzymes; however, the binding and functioning mechanisms remain unknown. The elucidated knowledge of inhibitory mechanisms of resveratrol will assist us in new drug discovery. We utilized molecular docking and molecular dynamics (MD) simulation to reveal how resveratrol and structurally similar compounds bind to various nucleotide-dependent enzymes, specifically, DNA polymerases, HIV-1 reverse transcriptase, and ribonucleotide reductase. The results show that resveratrol and its analogs exert their inhibitory effects by competing with the substrate dNTPs in these enzymes and blocking elongation of chain polymerization. In addition, the results imply that resveratrol binds to a variety of other ATP-/NTP-binding proteins.

Indexed as

Binding, CompetitiveCatalytic DomainDNA Polymerase IDNA Polymerase IIIDrug DiscoveryEnzyme InhibitorsHIV Reverse TranscriptaseHumansHydrogen BondingIn Vitro TechniquesLigandsMolecular Docking SimulationMolecular Dynamics SimulationMolecular StructureProtein ConformationResveratrolDNA Polymerase IDNA Polymerase IIIEnzyme InhibitorsHIV Reverse TranscriptaseLigandsResveratrolreverse transcriptase, Human immunodeficiency virus 1Ribonucleotide Reductasesinhibition mechanismmolecular dockingmolecular dynamics simulationnucleotide-related enzymesresveratrol

Identifiers

PMID32842666
PMCPMC7563984
OpenAlexW3080713944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.