Evidence map›Paper›PMID 32841273›Full record

ArticlePloS one2020

Reference genes for proximal femoral epiphysiolysis expression studies in broilers cartilage.

Ludmila Mudri Hul, Adriana Mércia Guaratini Ibelli, Jane de Oliveira Peixoto, Mayla Regina Souza, Igor Ricardo Savoldi, Débora Ester Petry Marcelino, Mateus Tremea, Mônica Corrêa Ledur

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Ludmila Mudri HulPrograma de Pós-Graduação em Ciências Veterinárias, Universidade Estadual do Centro-Oeste, Guarapuava, Paraná, Brazil.
Adriana Mércia Guaratini IbelliPrograma de Pós-Graduação em Ciências Veterinárias, Universidade Estadual do Centro-Oeste, Guarapuava, Paraná, Brazil.
Jane de Oliveira PeixotoPrograma de Pós-Graduação em Ciências Veterinárias, Universidade Estadual do Centro-Oeste, Guarapuava, Paraná, Brazil.
Mayla Regina SouzaPrograma de Pós-Graduação em Zootecnia, UDESC-Oeste, Chapecó, Santa Catarina, Brazil.
Igor Ricardo SavoldiPrograma de Pós-Graduação em Zootecnia, UDESC-Oeste, Chapecó, Santa Catarina, Brazil.
Débora Ester Petry MarcelinoFaculdade de Concórdia-FACC, Concórdia, Santa Catarina, Brazil.
Mateus TremeaUniversidade Federal de Santa Maria, campus Palmeira das Missões, Rio Grande do Sul, Brazil.
Mônica Corrêa LedurEmbrapa Suínos e Aves, Concórdia, Santa Catarina, Brazil.ORCID 0000-0002-2645-4735
Universidade do Estado de Santa Catarina · BRUniversidade Estadual do Centro-Oeste · BRConcordia University Wisconsin · USUniversidade Federal de Santa Maria · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The use of reference genes is required for relative quantification in gene expression analysis and the stability of these genes can be variable depending on the experimental design. Therefore, it is indispensable to test the reliability of endogenous genes previously to their use. This study evaluated nine candidate reference genes to select the most stable genes to be used as reference in gene expression studies with the femoral cartilage of normal and epiphysiolysis-affected broilers. The femur articular cartilage of 29 male broilers with 35 days of age was collected, frozen and further submitted to RNA extraction and quantitative PCR (qPCR) analysis. The candidate reference genes evaluated were GAPDH, HMBS, HPRT1, MRPS27, MRPS30, RPL30, RPL4, RPL5, and RPLP1. For the gene stability evaluation, three software were used: GeNorm, BestKeeper and NormFinder, and a global ranking was generated using the function RankAggreg. In this study, the RPLP1 and RPL5 were the most reliable endogenous genes being recommended for expression studies with femur cartilage in broilers with epiphysiolysis and possible other femur anomalies.

Indexed as

AlgorithmsAnimalsBird DiseasesCartilage, ArticularChickensEpiphyses, SlippedFemurGene ExpressionGene Expression ProfilingMaleReal-Time Polymerase Chain ReactionRNA, MessengerRNA, Messenger

Identifiers

PMID32841273
PMCPMC7447007
OpenAlexW3080099836

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.