Evidence map›Paper›PMID 32841214›Full record

ArticleJCI insight2020

Epigenetic silencing of CD4 expression in nonpathogenic SIV infection in African green monkeys.

Joseph C Mudd, Stephen Lai, Sanjana Shah, Andrew Rahmberg, Jacob K Flynn, Carly E Starke, Molly R Perkins, Amy Ransier, Sam Darko, Daniel C Douek and 3 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Prolonged experimental CD4Nature communications · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. CD4 receptor diversity represents an ancient protection mechanism against primate lentiviruses.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Review
  11. Deciphering DNA Methylation in HIV Infection.Frontiers in immunology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Joseph C MuddBarrier Immunity Section, Laboratory of Viral Diseases, Division of Intramural Research.
Stephen LaiBarrier Immunity Section, Laboratory of Viral Diseases, Division of Intramural Research.
Sanjana ShahBarrier Immunity Section, Laboratory of Viral Diseases, Division of Intramural Research.
Andrew RahmbergBarrier Immunity Section, Laboratory of Viral Diseases, Division of Intramural Research.
Jacob K FlynnBarrier Immunity Section, Laboratory of Viral Diseases, Division of Intramural Research.
Carly E StarkeBarrier Immunity Section, Laboratory of Viral Diseases, Division of Intramural Research.
Molly R PerkinsBarrier Immunity Section, Laboratory of Viral Diseases, Division of Intramural Research.
Amy RansierHuman Immunology Section, Vaccine Research Center, and.
Sam DarkoHuman Immunology Section, Vaccine Research Center, and.
Daniel C DouekHuman Immunology Section, Vaccine Research Center, and.
Vanessa M HirschNonhuman Primate Virology Section, Laboratory of Molecular Microbiology, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, NIH, Bethesda, Maryland, USA.
Mark CameronDepartment of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, Ohio, USA.
Jason M BrenchleyBarrier Immunity Section, Laboratory of Viral Diseases, Division of Intramural Research.
Institut de Recherche Vaccinale · FRCase Western Reserve University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

African green monkeys (AGMs) are natural hosts of SIV that postthymically downregulate CD4 to maintain a large population of CD4-CD8aa+ virus-resistant cells with Th functionality, which can result in AGMs becoming apparently cured of SIVagm infection. To understand the mechanisms of this process, we performed genome-wide transcriptional analysis on T cells induced to downregulate CD4 in vitro from AGMs and closely related patas monkeys and T cells that maintain CD4 expression from rhesus macaques. In T cells that downregulated CD4, pathway analysis revealed an atypical regulation of the DNA methylation machinery, which was reversible when pharmacologically targeted with 5-aza-2 deoxycytidine. This signature was driven largely by the dioxygenase TET3, which became downregulated with loss of CD4 expression. CpG motifs within the AGM CD4 promoter region became methylated during CD4 downregulation in vitro and were stably imprinted in AGM CD4-CD8aa+ T cells sorted directly ex vivo. These results suggest that AGMs use epigenetic mechanisms to durably silence the CD4 gene. Manipulation of these mechanisms could provide avenues for modulating SIV and HIV-1 entry receptor expression in hosts that become progressively infected with SIV, which could lead to novel therapeutic interventions aimed to reduce HIV viremia in vivo.

Indexed as

Epigenesis, GeneticGene Expression RegulationAnimalsCD4 AntigensCD4-Positive T-LymphocytesChlorocebus aethiopsDNA MethylationImmunity, InnateSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusCD4 AntigensAIDS/HIVImmunologyT cells

Identifiers

PMID32841214
PMCPMC7526541
OpenAlexW3081108552

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.