Evidence map›Paper›PMID 32840739›Full record

ArticleVirus genes2020

An antiviral drug-resistant mutant of hepatitis B virus with high replication capacity in association with a large in-frame deletion in the preS1 region of viral surface gene.

Ting Wang, Yanli Qin, Jing Zhang, Xinyan Li, Shuping Tong, Weifeng Zhao, Jiming Zhang

Abstract read
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In one paragraph

Article in Virus genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Ting Wang *Department of Infectious Diseases, Jing'An District Centre Hospital of Shanghai (Huashan Hospital, Fudan University Jing'An Branch), Shanghai, China.
Yanli Qin *Department of Infectious Diseases, Huashan Hospital, Fudan University, 12 Middle Wulumuqi Road, Shanghai, 200040, China.ORCID http://orcid.org/0000-0001-7003-0430
Jing ZhangKey Lab of Medical Molecular Virology, School of Basic Medical Sciences, Fudan University, Shanghai, China.
Xinyan LiDepartment of Hepatitis Diseases, Shanghai Public Health Clinical Center, Fudan University, Shanghai, China.
Shuping TongKey Lab of Medical Molecular Virology, School of Basic Medical Sciences, Fudan University, Shanghai, China.
Weifeng ZhaoDepartment of Infectious Diseases, The First Affiliated Hospital of Soochow University, 188 Shizi Street, Gusu District, Soochow, 215006, Jiangsu, China. zhaoweifeng@suda.edu.cn.
Jiming ZhangDepartment of Infectious Diseases, Jing'An District Centre Hospital of Shanghai (Huashan Hospital, Fudan University Jing'An Branch), Shanghai, China. jmzhang@fudan.edu.cn.
Fudan University · CNShanghai Public Health Clinical Center · CNSoochow University · CN

Funding

National Natural Science Foundation of China 81101241National Natural Science Foundation of China 81672009National Natural Science Foundation of China 81871640Shanghai Key Clinical Specialty Construction program ZK2019B24Shanghai Pujiang Talent Plan 12PJ1401600
6 · The paper itself

Abstract

We amplified a full-length hepatitis B virus (HBV) genome from the serum of a chronic hepatitis B patient who experienced virological breakthrough with high HBV DNA titer following adefovir (ADV) therapy. The PCR product was cloned and sequencing of the six clones revealed an isolate of C2 subgenotype. Mutation(s) in the polymerase gene responsible for ADV resistance included rtA181T (all clones) and rtN236T (four clones). The rtA181T mutation caused the W172* nonsense mutation in the overlapping S gene. In addition, all the clones harbored another nonsense mutation in the S gene (C69*) and a 207nt in-frame deletion in the preS1 region. These clones were converted to a 1.1mer construct for transient transfection of Huh7 cells. All the clones were deficient in hepatitis B surface antigen production. Three clones had similar levels of DNA replication. Comparison with a wild-type clone of the same genotype revealed a higher intracellular level of replicative DNA for clone c4, which was reduced by putting back the deleted 207nt, but not by co-transfection with an expression construct for the three surface proteins to rescue virion production. The HBcAg expression of the c4 and c4+207nt clones was mainly in the nucleus. Co-transfection with the L/M/S proteins expression construct did not alter the distribution of core. Clone c4 showed a significantly decreased susceptibility to ADV, a mild reduction in susceptibility to lamivudine and tenofovir, but remained sensitive to entecavir. In conclusion, this is an unusual ADV-resistant HBV isolate harboring two nonsense mutations in the S gene and a large in-frame deletion in the preS1 region, but still retains a high replication phenotype, which can provide a platform for recombinant vector construction.

Indexed as

Genes, ViralAdenineAdultAntiviral AgentsDNA, ViralDrug Resistance, ViralGenotypeHepatitis B, ChronicHepatitis B Surface AntigensHumansMaleMutationOrganophosphonatesadefovirAdenineAntiviral AgentsDNA, ViralHepatitis B Surface AntigensOrganophosphonatesHepatitis B surface antigenHepatitis B virusPreS1 deletionReplication capacityrtN236/rtA181 mutationsSurface gene

Identifiers

PMID32840739
OpenAlexW3080321352

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.