Evidence map›Paper›PMID 32840026›Full record

ArticleEnvironmental microbiology2020

Genetic examination of the marine bacterium Pseudoalteromonas luteoviolacea and effects of its metamorphosis-inducing factors.

Amanda T Alker, Nathalie Delherbe, Trevor N Purdy, Bradley S Moore, Nicholas J Shikuma

Open access · greenAbstract read
In one paragraph

Article in Environmental microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Influence of reef habitat on coral microbial associations.Environmental microbiology reports · 2024
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  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Marine and Anthropogenic Bromopyrroles Alter Cellular CaEnvironmental science & technology · 2021
    Article
  12. Article
  13. Draft Genome Sequences of Two Bacteria from theMicrobiology resource announcements · 2021
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Amanda T AlkerDepartment of Biology and Viral Information Institute, San Diego State University, San Diego, CA, 92182, USA.ORCID 0000-0002-4428-0978
Nathalie DelherbeDepartment of Biology and Viral Information Institute, San Diego State University, San Diego, CA, 92182, USA.
Trevor N PurdyCenter for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0001-5941-3924
Bradley S MooreCenter for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0002-4652-1253
Nicholas J ShikumaDepartment of Biology and Viral Information Institute, San Diego State University, San Diego, CA, 92182, USA.ORCID 0000-0001-5518-5020
San Diego State University · USScripps Institution of Oceanography · US

Funding

Training Program in Marine BiotechnologyT32GM067550 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GERWICK, WILLIAM HENRY · 2004 to 2019
$2.0M
Natural Sources and Microbial Transformation of Marine Halogenated PollutantsR01ES030316 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ALLEN, ERIC ELLSWORTH, MOORE, BRADLEY S · 2018 to 2022
$669k
Alfred P. Sloan FoundationNational Science Foundation 1942251National Science Foundation 2017232404National Science Foundation OCE-1837116NIEHS NIH HHS R01 ES030316NIGMS NIH HHS T32 GM067550Office of Naval Research N00014-16-1-2135Office of Naval Research N00014-17-1-2677Office of Naval Research N00014-20-1-2120
6 · The paper itself

Abstract

Pseudoalteromonas luteoviolacea is a globally distributed marine bacterium that stimulates the metamorphosis of marine animal larvae, an important bacteria-animal interaction that can promote the recruitment of animals to benthic ecosystems. Recently, different P. luteoviolacea isolates have been shown to produce two stimulatory factors that can induce tubeworm and coral metamorphosis; Metamorphosis-Associated Contractile structures (MACs) and tetrabromopyrrole (TBP) respectively. However, it remains unclear what proportion of P. luteoviolacea isolates possess the genes encoding MACs, and what phenotypic effect MACs and TBP have on other larval species. Here, we show that 9 of 19 sequenced P. luteoviolacea genomes genetically encode both MACs and TBP. While P. luteoviolacea biofilms producing MACs stimulate the metamorphosis of the tubeworm Hydroides elegans, TBP biosynthesis genes had no effect under the conditions tested. Although MACs are lethal to larvae of the cnidarian Hydractinia symbiologicarpus, P. luteoviolacea mutants unable to produce MACs are capable of stimulating metamorphosis. Our findings reveal a hidden complexity of interactions between a single bacterial species, the factors it produces and two species of larvae belonging to different phyla.

Indexed as

Metamorphosis, BiologicalAnimalsBacterial ProteinsBiofilmsGenome, BacterialHydrozoaLarvaMutationPolychaetaPseudoalteromonasPyrrolesSpecies SpecificityBacterial ProteinsPyrrolestetrabromopyrrole

Identifiers

PMID32840026
PMCPMC8214333
OpenAlexW3080681533

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.