Evidence map›Paper›PMID 32839906›Full record

ArticleEnvironmental science and pollution research international2021

Microbiological assessment of an urban lagoon system in the coastal zone of Rio de Janeiro, Brazil.

Lorena da Graça Pedrosa de Macena, Renato Castiglia Feitosa, Carmen Baur Vieira, Irene Trigueiros Araújo, Mami Taniuchi, Marize Pereira Miagostovich

Abstract read
PubMed Publisher
In one paragraph

Article in Environmental science and pollution research international, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Assessment of virus concentration methods for detecting SARS-CoV-2 IN wastewater.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
  4. Article
  5. Fast screening of enteropathogens in marine water samples.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Lorena da Graça Pedrosa de MacenaLaboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute (IOC), Oswaldo Cruz Foundation (FIOCRUZ), Helio e Peggy Pereira Pavilion, Avenida Brasil, 4365, Manguinhos, Rio de Janeiro, RJ, 21040-360, Brazil. lorena.macena@ioc.fiocruz.br.ORCID http://orcid.org/0000-0003-1420-6010
Renato Castiglia FeitosaDepartment of Sanitation and Environmental Health, National School of Public Health (ENSP), Oswaldo Cruz Foundation (FIOCRUZ), Rua Leopoldo Bulhões, 1.480, Manguinhos, Rio de Janeiro, RJ, 21041-210, Brazil.
Carmen Baur VieiraDepartment of Microbiology and Parasitology (MIP), Biomedical Institute, Federal Fluminense University (UFF), Rua Professor Hernani Melo, 101, São Domingos, Niterói, RJ, 24210-130, Brazil.
Irene Trigueiros AraújoLaboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute (IOC), Oswaldo Cruz Foundation (FIOCRUZ), Helio e Peggy Pereira Pavilion, Avenida Brasil, 4365, Manguinhos, Rio de Janeiro, RJ, 21040-360, Brazil.
Mami TaniuchiDivision of Infectious Diseases and International Health, University of Virginia School of Medicine, Charlottesville, Virginia, VA, 22903, USA.
Marize Pereira MiagostovichLaboratory of Comparative and Environmental Virology, Oswaldo Cruz Institute (IOC), Oswaldo Cruz Foundation (FIOCRUZ), Helio e Peggy Pereira Pavilion, Avenida Brasil, 4365, Manguinhos, Rio de Janeiro, RJ, 21040-360, Brazil.
Fundação Oswaldo Cruz · BRUniversidade Federal Fluminense · BRUniversity of Virginia · US

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico CNPq-Universal-406414/2016-5Coordenação de Aperfeiçoamento de Pessoal de Nível Superior CAPES-Finance Code 001FAPERJ Faperj-E-26/202.821/2018Fundação Oswaldo Cruz Instituto Oswaldo Cruz PAEF 2
6 · The paper itself

Abstract

This study aims to assess microbiological contamination using a molecular tool for detection of multiple enteropathogens in a coastal ecosystem area in Rio de Janeiro, Brazil. Ten litres of superficial water samples were obtained during the spring ebb tide from sampling sites along the Jacarepaguá watershed. Samples were concentrated using skimmed milk flocculation method for TaqMan array card (TAC), designed to identify 35 enteric pathogens simultaneously, and single TaqMan qPCR analysis for detecting human adenovirus (HAdV) and JC human polyomavirus (JCPyV) as faecal indicator viruses (FIV). TAC results identified 17 enteric pathogens including 4/5 viral species investigated, 8/15 bacteria, 4/6 protozoa and 1/7 helminths. Escherichia coli concentration was also measured as faecal indicator bacteria (FIB) using Colilert Quanti-Tray System with positivity in all samples studied. HAdV and JCPyV qPCR were detected in 8 and 4 samples, respectively, with concentration ranging from 8 × 10

Indexed as

EcosystemWater MicrobiologyBrazilEnvironmental MonitoringFlocculationHumansBrazilCoastal urban ecosystemsEnteropathogensFaecal indicators bacteriaFaecal indicators virusesTaqMan array cardWatershed

Identifiers

PMID32839906
OpenAlexW3081325526

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.