Evidence map›Paper›PMID 32839667›Full record

ArticleThe EPMA journal2020

Optimal multiparametric set-up modelled for best survival outcomes in palliative treatment of liver malignancies: unsupervised machine learning and 3 PM recommendations.

Elisha Goldstein, Kristina Yeghiazaryan, Ashar Ahmad, Frank A Giordano, Holger Fröhlich, Olga Golubnitschaja

Open access · hybridAbstract read
In one paragraph

Article in The EPMA journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Elisha GoldsteinMachine learning research group, Department of Bioinformatics, Weizmann Institute, Rehovot, Israel.
Kristina YeghiazaryanIT-Department, University Hospital Bonn, Rheinische Friedrich-Wilhelms Universität Bonn, Bonn, Germany.
Ashar AhmadAI & Data Science, Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53754 Sankt Augustin, Germany.
Frank A GiordanoDepartment of Radiation Oncology, University Hospital Bonn, Rheinische Friedrich-Wilhelms Universität Bonn, Bonn, Germany.
Holger FröhlichAI & Data Science, Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53754 Sankt Augustin, Germany.
Olga GolubnitschajaPredictive, Preventive and Personalised (3P) Medicine, Department of Radiation Oncology, University Hospital Bonn, Rheinische Friedrich-Wilhelms Universität Bonn, Venusberg-Campus 1, 53127 Bonn, Germany.
University of Bonn · DEFraunhofer Institute for Algorithms and Scientific Computing · DEUniversity Hospital Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over the last decade, a rapid rise in deaths due to liver disease has been observed especially amongst young people. Nowadays liver disease accounts for approximately 2 million deaths per year worldwide: 1 million due to complications of cirrhosis and 1 million due to viral hepatitis and hepatocellular carcinoma. Besides primary liver malignancies, almost all solid tumours are capable to spread metastases to the liver, in particular, gastrointestinal cancers, breast and genitourinary cancers, lung cancer, melanomas and sarcomas. A big portion of liver malignancies undergo palliative care. To this end, the paradigm of the palliative care in the liver cancer management is evolving from "just end of the life" care to careful evaluation of all aspects relevant for the survivorship. In the presented study, an evidence-based approach has been taken to target molecular pathways and subcellular components for modelling most optimal conditions with the longest survival rates for patients diagnosed with advanced liver malignancies who underwent palliative treatments. We developed an unsupervised machine learning (UML) approach to robustly identify patient subgroups based on estimated survival curves for each individual patient and each individual potential biomarker. UML using consensus hierarchical clustering of biomarker derived risk profiles resulted into 3 stable patient subgroups. There were no significant differences in age, gender, therapy, diagnosis or comorbidities across clusters. Survival times across clusters differed significantly. Furthermore, several of the biomarkers demonstrated highly significant pairwise differences between clusters after correction for multiple testing, namely, "comet assay" patterns of classes I, III, IV and expression rates of calgranulin A (S100), SOD2 and profilin-all measured ex vivo in circulating leucocytes. Considering worst, intermediate and best survival curves with regard to identified clusters and corresponding patterns of parameters measured, clear differences were found for "comet assay" and S100 expression patterns. In conclusion, multi-faceted cancer control within the palliative care of liver malignancies is crucial for improved disease outcomes including individualised patient profiling, predictive models and implementation of corresponding cost-effective risks mitigating measures detailed in the paper. The "proof-of-principle" model is presented.

Indexed as

Antioxidant compoundsBiomarker patternsBreast cancerCalgranulin ACatalaseCirculating leucocytesColorectal cancerComet assayCovid-19DetoxificationEx vivoGenoprotectionHepatitisHepatocellular carcinomaHypoxiaImpairmentsIndividualised patient profileIndividual outcomesInflammationLiquid biopsyLiver diseasesLiver malignancyMetalloproteinaseMetastasisMulti-level diagnosticsMulti-omicsMultiparametric modellingPalliative medicinePatient stratificationPhytochemicalsPredictive preventive personalised medicine (PPPM/3 PM)ProfilinPrognosisProstate cancerRedox-based therapyRedox statusRho ARisk mitigationROS inhibitionS100ScavengerSelective internal radiation therapy (SIRT)SOD-2Superoxide-dismutase 2SurvivalThioredoxinTrans-arterial chemo-embolisation (TACE)Unsupervised machine learningViral infection

Identifiers

PMID32839667
PMCPMC7416811
OpenAlexW3048623948

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.