Evidence map›Paper›PMID 32839469›Full record

ArticleNature communications2020

Genome-wide functional analysis of phosphatases in the pathogenic fungus Cryptococcus neoformans.

Jae-Hyung Jin, Kyung-Tae Lee, Joohyeon Hong, Dongpil Lee, Eun-Ha Jang, Jin-Young Kim, Yeonseon Lee, Seung-Heon Lee, Yee-Seul So, Kwang-Woo Jung and 22 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Pooled it
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  12. Computational Approaches for Discovering Virulence Factors inJournal of fungi (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 5 institutions in 2 countries.

Jae-Hyung Jin *Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0002-0589-9444
Kyung-Tae Lee *Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0002-0068-6220
Joohyeon HongDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.
Dongpil LeeDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.
Eun-Ha JangDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.
Jin-Young KimDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0002-5079-5249
Yeonseon LeeDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.
Seung-Heon LeeDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0002-0578-7653
Yee-Seul SoDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.
Kwang-Woo JungDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0003-0021-5100
Dong-Gi LeeDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0002-6767-9543
Eunji JeongDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.
Minjae LeeDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0002-5794-9984
Yu-Byeong JangDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0002-5100-7654
Yeseul ChoiDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0002-9369-902X
Myung Ha LeeDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0003-1002-9563
Ji-Seok KimDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0001-8829-5138
Seong-Ryong YuDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0003-0025-3860
Jin-Tae ChoiDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0003-3077-1116
Jae-Won LaDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.
Haneul ChoiDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.
Sun-Woo KimDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.
Kyung Jin SeoDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.
Yelin LeeDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0003-1027-9220
Eun Jung ThakDepartment of Life Science, College of Natural Science, Chung-Ang University, Seoul, 06974, Korea.
Jaeyoung ChoiSmart Farm Research Center, Korea Institute of Science and Technology, Gangneung, 25451, Korea.ORCID http://orcid.org/0000-0003-2206-4593
Anna F AveretteDepartments of Molecular Genetics and Microbiology, Medicine, and Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, USA.
Yong-Hwan LeeDepartment of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Korea.ORCID http://orcid.org/0000-0003-2462-1250
Joseph HeitmanDepartments of Molecular Genetics and Microbiology, Medicine, and Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, USA.
Hyun Ah KangDepartment of Life Science, College of Natural Science, Chung-Ang University, Seoul, 06974, Korea.
Eunji CheongDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea.ORCID http://orcid.org/0000-0001-6158-7851
Yong-Sun BahnDepartment of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, 03722, Korea. ysbahn@yonsei.ac.kr.ORCID http://orcid.org/0000-0001-9573-5752
Yonsei University · KRSeoul National University · KRChung-Ang University · KRDuke Medical Center · USKorea Atomic Energy Research Institute · KR

Funding

Structure, function, and evolution of the Cryptococcus MAT locusR01AI050113 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2002 to 2024
$8.5M
ROLE OF CALCINEURIN IN C. NEOFORMANS MATING AND FRUITINGR01AI039115 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 1997 to 2025
$6.7M
Genetics of Cryptococcus sexual reproductionR37AI039115 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2011 to 2020
$4.9M
NIAID NIH HHS R01 AI039115NIAID NIH HHS R01 AI050113NIAID NIH HHS R37 AI039115
6 · The paper itself

Abstract

Phosphatases, together with kinases and transcription factors, are key components in cellular signalling networks. Here, we present a systematic functional analysis of the phosphatases in Cryptococcus neoformans, a fungal pathogen that causes life-threatening fungal meningoencephalitis. We analyse 230 signature-tagged mutant strains for 114 putative phosphatases under 30 distinct in vitro growth conditions, revealing at least one function for 60 of these proteins. Large-scale virulence and infectivity assays using insect and mouse models indicate roles in pathogenicity for 31 phosphatases involved in various processes such as thermotolerance, melanin and capsule production, stress responses, O-mannosylation, or retromer function. Notably, phosphatases Xpp1, Ssu72, Siw14, and Sit4 promote blood-brain barrier adhesion and crossing by C. neoformans. Together with our previous systematic studies of transcription factors and kinases, our results provide comprehensive insight into the pathobiological signalling circuitry of C. neoformans.

Indexed as

AnimalsCluster AnalysisCryptococcosisCryptococcus neoformansFemaleFungal ProteinsGene Expression ProfilingGene Expression Regulation, FungalGenome, FungalGenome-Wide Association StudyMice, Inbred StrainsPhosphoric Monoester HydrolasesPhosphotransferasesSignal TransductionThermotoleranceTranscription FactorsFungal ProteinsPhosphoric Monoester HydrolasesPhosphotransferasesTranscription Factors

Identifiers

PMID32839469
PMCPMC7445287
OpenAlexW3080399823

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.