Evidence map›Paper›PMID 32838933›Full record

ArticleVirology2020

Differential SP1 interactions in SV40 chromatin from virions and minichromosomes.

Kincaid Rowbotham, Jacob Haugen, Barry Milavetz

Open access · greenAbstract read
In one paragraph

Article in Virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kincaid RowbothamDepartment of Biomedical Sciences, University of North Dakota School of Medicine and Health Sciences, Grand Forks, 58202, USA.
Jacob HaugenDepartment of Biomedical Sciences, University of North Dakota School of Medicine and Health Sciences, Grand Forks, 58202, USA.
Barry MilavetzDepartment of Biomedical Sciences, University of North Dakota School of Medicine and Health Sciences, Grand Forks, 58202, USA. Electronic address: barry.milavetz@und.edu.
University of North Dakota · US

Funding

The role of class IIa Hdac in regulating cell fate choice in early cortical development.P20GM104360 · NIGMS · UNIVERSITY OF NORTH DAKOTA · PI VAUGHAN, ROXANNE A · 2013 to 2023
$21.1M
Tracking and Evaluation CoreU54GM128729 · NIGMS · UNIVERSITY OF NORTH DAKOTA · PI BASSON, MARC D. · 2018 to 2022
$20.3M
EPIGENETIC REGULATION OF THE INITIATION OF AN SV40 LYTIC INFECTIONR15AI094441 · NIAID · UNIVERSITY OF NORTH DAKOTA · PI MILAVETZ, BARRY IRA · 2012 to 2012
$414k
EPIGENETIC REGULATION OF THE ESTABLISHMENT OF AN SV40 INFECTIONR03AI142011 · NIAID · UNIVERSITY OF NORTH DAKOTA · PI MILAVETZ, BARRY IRA · 2019 to 2020
$139k
NIAID NIH HHS R03 AI142011NIAID NIH HHS R15 AI094441NIGMS NIH HHS P20 GM104360NIGMS NIH HHS U54 GM128729
6 · The paper itself

Abstract

SP1 binding in SV40 chromatin in vitro and in vivo was characterized in order to better understand its role during the initiation of early transcription. We observed that chromatin from disrupted virions, but not minichromosomes, was efficiently bound by HIS-tagged SP1 in vitro, while the opposite was true for the presence of endogenous SP1 introduced in vivo. Using ChIP-Seq to compare the location of SP1 to nucleosomes carrying modified histones, we found that SP1 could occupy its whole binding site in virion chromatin but only the early side of its binding site in most of the minichromosomes carrying modified histones due to the presence of overlapping nucleosomes. The results suggest that during the initiation of an SV40 infection, SP1 binds to an open region in SV40 virion chromatin but quickly triggers chromatin reorganization and its own removal.

Indexed as

ChromatinHost-Pathogen InteractionsHumansNucleosomesPolyomavirus InfectionsProtein BindingSimian virus 40Sp1 Transcription FactorVirionChromatinNucleosomesSp1 Transcription FactorChromatinHistonesMinichromosomesNuclesomesSimian virus 40SP1Transcription

Identifiers

PMID32838933
PMCPMC10035769
OpenAlexW3037287221

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.