Evidence map›Paper›PMID 32835207›Full record

ArticleBiosafety and health2019

Intra-host Ebola viral adaption during human infection.

William J Liu, Weifeng Shi, Wuyang Zhu, Cong Jin, Shumei Zou, Ji Wang, Yuehua Ke, Xiaofeng Li, Mi Liu, Tao Hu and 23 more

Open access · goldAbstract read
In one paragraph

Article in Biosafety and health, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 9 institutions in 3 countries.

William J LiuNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Weifeng ShiShandong Universities Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases, Taishan Medical University, Taian 271000, China.
Wuyang ZhuNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Cong JinNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Shumei ZouNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Ji WangNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Yuehua KeInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing 100071, China.
Xiaofeng LiState Key Laboratory of Pathogen and Biosecurity, Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing 100071, China.
Mi LiuNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Tao HuShandong Universities Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases, Taishan Medical University, Taian 271000, China.
Hang FanState Key Laboratory of Pathogen and Biosecurity, Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing 100071, China.
Yigang TongState Key Laboratory of Pathogen and Biosecurity, Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, Beijing 100071, China.
Xiang ZhaoNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Wenbin ChenNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Yuhui ZhaoCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
Di LiuCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
Gary WongCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
Chengchao ChenBGI-Shenzhen, Shenzhen 518083, China.
Chunyu GengBGI-Shenzhen, Shenzhen 518083, China.
Weiwei XieBGI-Shenzhen, Shenzhen 518083, China.
Hui JiangBGI-Shenzhen, Shenzhen 518083, China.
Idrissa Laybor KamaraSierra Leone Ministry of Health and Sanitation, Freetown, Sierra Leone.
Abdul KamaraSierra Leone Ministry of Health and Sanitation, Freetown, Sierra Leone.
Matt LebbySierra Leone Ministry of Health and Sanitation, Freetown, Sierra Leone.
Brima KargboSierra Leone Ministry of Health and Sanitation, Freetown, Sierra Leone.
Xiangguo QiuSpecial Pathogens Program, National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Canada.
Yu WangChinese Center for Disease Control and Prevention, Beijing 102206, China.
Xiaofeng LiangChinese Center for Disease Control and Prevention, Beijing 102206, China.
Mifang LiangNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Xiaoping DongNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Guizhen WuNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
George F GaoNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Yuelong ShuNHC Key Laboratory of Biosafety National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
National Institute for Viral Disease Control and Prevention · CNInstitute of Microbiology · CNMinistry of Health and Sanitation · SLBGI Group (China) · CNChinese Center For Disease Control and Prevention · CNTaishan Medical University · CNAcademy of Military Medical Sciences · CNChinese Academy of Sciences · CNPublic Health Agency of Canada · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The onsite next generation sequencing (NGS) of Ebola virus (EBOV) genomes during the 2013-2016 Ebola epidemic in Western Africa provides an opportunity to trace the origin, transmission, and evolution of this virus. Herein, we have diagnosed a cohort of EBOV patients in Sierra Leone in 2015, during the late phase of the outbreak. The surviving EBOV patients had a recovery process characterized by decreasing viremia, fever, and biochemical parameters. EBOV genomes sequenced through the longitudinal blood samples of these patients showed dynamic intra-host substitutions of the virus during acute infection, including the previously described short stretches of 13 serial T>C mutations. Remarkably, within individual patients, samples collected during the early phase of infection possessed Ts at these nucleotide sites, whereas they were replaced by Cs in samples collected in the later phase, suggesting that these short stretches of T>C mutations could emerge independently. In addition, up to a total of 35 nucleotide sites spanning the EBOV genome were mutated coincidently. Our study showed the dynamic intra-host adaptation of EBOV during patient recovery and gave more insight into the complex EBOV-host interactions.

Indexed as

AdaptationBlood biochemistryClinical manifestationsEbola virusGenome sequencingIntra-host Nucleotide Variation

Identifiers

PMID32835207
PMCPMC7347341
OpenAlexW2915235806

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.