Evidence map›Paper›PMID 32833964›Full record

ArticlePloS one2020

An iron-dependent metabolic vulnerability underlies VPS34-dependence in RKO cancer cells.

Marek J Kobylarz, Jonathan M Goodwin, Zhao B Kang, John W Annand, Sarah Hevi, Ellen O'Mahony, Gregory McAllister, John Reece-Hoyes, Qiong Wang, John Alford and 12 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 2 institutions in 2 countries.

Marek J KobylarzNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Jonathan M GoodwinNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Zhao B KangNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
John W AnnandNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Sarah HeviNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Ellen O'MahonyNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Gregory McAllisterNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
John Reece-HoyesNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Qiong WangNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
John AlfordNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Carsten RussNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Alicia LindemanNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Martin BeibelNovartis Institutes for Biomedical Research, Basel, Switzerland.
Guglielmo RomaNovartis Institutes for Biomedical Research, Basel, Switzerland.ORCID 0000-0002-8020-4219
Walter CarboneNovartis Institutes for Biomedical Research, Basel, Switzerland.
Judith KnehrNovartis Institutes for Biomedical Research, Basel, Switzerland.
Joseph LoureiroNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Christophe AntczakNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Dmitri WiederschainNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Leon O MurphyNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.
Suchithra MenonNovartis Institutes for Biomedical Research, Cambridge, MA, United States of America.ORCID 0000-0002-8604-5220
Beat NyfelerNovartis Institutes for Biomedical Research, Basel, Switzerland.
Novartis (United States) · USNovartis (Switzerland) · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

VPS34 is a key regulator of endomembrane dynamics and cargo trafficking, and is essential in cultured cell lines and in mice. To better characterize the role of VPS34 in cell growth, we performed unbiased cell line profiling studies with the selective VPS34 inhibitor PIK-III and identified RKO as a VPS34-dependent cellular model. Pooled CRISPR screen in the presence of PIK-III revealed endolysosomal genes as genetic suppressors. Dissecting VPS34-dependent alterations with transcriptional profiling, we found the induction of hypoxia response and cholesterol biosynthesis as key signatures. Mechanistically, acute VPS34 inhibition enhanced lysosomal degradation of transferrin and low-density lipoprotein receptors leading to impaired iron and cholesterol uptake. Excess soluble iron, but not cholesterol, was sufficient to partially rescue the effects of VPS34 inhibition on mitochondrial respiration and cell growth, indicating that iron limitation is the primary driver of VPS34-dependency in RKO cells. Loss of RAB7A, an endolysosomal marker and top suppressor in our genetic screen, blocked transferrin receptor degradation, restored iron homeostasis and reversed the growth defect as well as metabolic alterations due to VPS34 inhibition. Altogether, our findings suggest that impaired iron mobilization via the VPS34-RAB7A axis drive VPS34-dependence in certain cancer cells.

Indexed as

Cell HypoxiaCell Line, TumorCell ProliferationCholesterolClass III Phosphatidylinositol 3-KinasesEndosomesHEK293 CellsHumansIronLysosomesNeoplasmsrab7 GTP-Binding Proteinsrab GTP-Binding ProteinsReceptors, LDLTransferrinCholesterolClass III Phosphatidylinositol 3-KinasesIronrab7 GTP-Binding Proteinsrab GTP-Binding ProteinsReceptors, LDLTransferrin

Identifiers

PMID32833964
PMCPMC7446895
OpenAlexW3080804333

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.