Evidence map›Paper›PMID 32832836›Full record

ArticleJCO precision oncology2020

Pathogenic Variants in Cancer Predisposition Genes and Prostate Cancer Risk in Men of African Ancestry.

Marco Matejcic, Yesha Patel, Jenna Lilyquist, Chunling Hu, Kun Y Lee, Rohan D Gnanaolivu, Steven N Hart, Eric C Polley, Siddhartha Yadav, Nicholas J Boddicker and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in JCO precision oncology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
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  15. NBN Pathogenic Germline Variants are Associated with Pan-Cancer Susceptibility and In Vitro DNA Damage Response Defects.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article
  16. Article
  17. Prevalence of GermlineCancers · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 11 institutions in 2 countries.

Marco MatejcicCenter for Genetic Epidemiology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Yesha PatelCenter for Genetic Epidemiology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Jenna LilyquistDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA.
Chunling HuDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, USA.
Kun Y LeeDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA.
Rohan D GnanaolivuDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA.
Steven N HartDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA.
Eric C PolleyDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA.
Siddhartha YadavDepartment of Oncology, Mayo Clinic, Rochester, Minnesota 55905, USA.
Nicholas J BoddickerDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA.
Raed SamaraQIAGEN Sciences, QIAGEN Inc., Frederick, Maryland 21703, USA.
Lucy XiaCenter for Genetic Epidemiology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Xin ShengCenter for Genetic Epidemiology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Alexander LubmawaUro Care, Kampala 25974, Uganda.
Vicky KidduUro Care, Kampala 25974, Uganda.
Benon MasabaMulago Hospital, Kampala 7051, Uganda.
Dan NamuguziMakerere University College of Health Sciences, Kampala 7072, Uganda.
George MutemaSurgPath, Kampala, Uganda.
Kuteesa JobKagando Hospital, Kasese, Uganda.
Dabanja M HenryMengo Hospital, Kampala 7161, Uganda.
Sue A InglesCenter for Genetic Epidemiology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Lynne WilkensEpidemiology Program, University of Hawaii Cancer Center, Honolulu, HI 96813, USA.
Loic Le MarchandEpidemiology Program, University of Hawaii Cancer Center, Honolulu, HI 96813, USA.
Stephen WatyaUro Care, Kampala 25974, Uganda.
Fergus J CouchDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA.
David V ContiCenter for Genetic Epidemiology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Christopher A HaimanCenter for Genetic Epidemiology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.
Mayo Clinic in Florida · USUniversity of Southern California · USUro Care Hospital · UGMayo Clinic in Arizona · USKagando Hospital · UGMakerere University · UGMengo Hospital · UGMulago Hospital · UGQiagen (United States) · USUniversity of Hawaiʻi at Mānoa · USUniversity of Hawaii Cancer Center

Funding

Understanding Population Differences in Cancer: The MEC StudyU01CA164973 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI HAIMAN, CHRISTOPHER ALAN, LE MARCHAND, LOIC · 2015 to 2025
$37.4M
Genome-wide sequencing of prostate cancer in men of African ancestryR01CA165862 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HAIMAN, CHRISTOPHER ALAN, REICH, DAVID E · 2012 to 2016
$3.1M
NCI NIH HHS R01 CA165862NCI NIH HHS U01 CA164973
6 · The paper itself

Abstract

purposeIn studies of men of European ancestry, rare pathogenic variants in DNA repair pathway genes have been shown to be associated with risk of aggressive prostate cancer. The contribution of rare coding variation to prostate cancer risk in men of African ancestry has not been established.

methodsWe sequenced a panel of 19 DNA repair and cancer predisposition genes in 2,453 African American and 1,151 Ugandan prostate cancer cases and controls. Rare variants were classified as pathogenic or putatively functionally disruptive and examined in association with prostate cancer risk and disease aggressiveness in gene and pathway-level association analyses.

resultsPathogenic variants were found in 75 out of 2,098 cases (3.6%) and 31 out of 1,481 controls (2.1%) (OR=1.82, 95% CI=1.19 to 2.79, P=0.0044) with the association being stronger for more aggressive disease phenotypes (OR=3.10, 95% CI=1.54 to 6.23, P=0.0022). The highest risks for aggressive disease were observed with pathogenic variants in the

conclusionsRare pathogenic variants in DNA repair genes have appreciable effects on risk of aggressive prostate cancer in men of African ancestry. These findings have potential implications for panel testing and risk stratification in this high-risk population.

Identifiers

PMID32832836
PMCPMC7442213
OpenAlexW3003926749

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.