Evidence map›Paper›PMID 32830294›Full record

ReviewApplied microbiology and biotechnology2020

Old yellow enzymes: structures and structure-guided engineering for stereocomplementary bioreduction.

Qinghua Shi, Huibin Wang, Junling Liu, Shang Li, Jiyang Guo, Hengyu Li, Xian Jia, Hua Huo, Zhendong Zheng, Song You and 1 more

Abstract readReview
PubMed Publisher
In one paragraph

Review in Applied microbiology and biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. The Structural Biology of Catalase Evolution.Sub-cellular biochemistry · 2024
    Review
  6. Review
  7. Plant direct · 2023
    Article
  8. RNA-Seq Based Transcriptome Analysis ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  9. "A Study in Yellow": Investigations in the Stereoselectivity of Ene-Reductases.Chembiochem : a European journal of chemical biology · 2022
    Review
  10. The Old Yellow Enzyme OfrA FostersFrontiers in microbiology · 2022
    Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Qinghua Shi *School of Life Sciences and Biopharmaceutical Sciences, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenhe, Shenyang, 110016, People's Republic of China.
Huibin Wang *School of Pharmacy, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenhe, Shenyang, 110016, People's Republic of China.
Junling Liu *Department of Oncology, General Hospital of Northern Theater Command, 83 Wenhua Road, Shenhe, Shenyang, 110016, People's Republic of China.
Shang LiWuya College of Innovation, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenhe, Shenyang, 110016, People's Republic of China.
Jiyang GuoSchool of Life Sciences and Biopharmaceutical Sciences, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenhe, Shenyang, 110016, People's Republic of China.
Hengyu LiSchool of Life Sciences and Biopharmaceutical Sciences, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenhe, Shenyang, 110016, People's Republic of China.
Xian JiaSchool of Pharmaceutical Engineering, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenhe, Shenyang, 110016, People's Republic of China.
Hua HuoDepartment of Clinical Trials Management Agency, General Hospital of Northern Theater Command, 83 Wenhua Road, Shenhe, Shenyang, 110016, People's Republic of China. HH_602@sina.com.
Zhendong ZhengDepartment of Oncology, General Hospital of Northern Theater Command, 83 Wenhua Road, Shenhe, Shenyang, 110016, People's Republic of China. zhengzhdong@163.com.
Song YouSchool of Life Sciences and Biopharmaceutical Sciences, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenhe, Shenyang, 110016, People's Republic of China. yousong206@aliyun.com.
Bin QinWuya College of Innovation, Shenyang Pharmaceutical University, 103 Wenhua Road, Shenhe, Shenyang, 110016, People's Republic of China. to-qinbin@163.com.ORCID http://orcid.org/0000-0002-9180-0550

Funding

LiaoNing Revitalization Talents Program XLYC1907153National Natural Science Foundation of China 31971207, 81602993Young Elite Scientists Sponsorship Program by CAST 2016QNRC001
6 · The paper itself

Abstract

Since the first discovery of old yellow enzyme 1 (OYE1) from Saccharomyces pastorianus in 1932, biocatalytic asymmetric reduction of activated alkenes by OYEs has become a valuable reaction in organic synthesis. To access stereocomplementary C=C-bond bioreduction, the mining of novel OYEs and especially the protein engineering of existing OYEs have been performed, which successfully achieved the stereocomplementary reduction in several cases and further raise the potential of applications. In this review, we analyzed the structures, active sites, and substrate recognition of OYEs, which are the bases for their substrate specificity and stereospecificity. Sequence similarity network of OYEs superfamily was also constructed to investigate the scope of characterized OYEs. The structure-guided engineering to switch the stereoselectivity of OYEs and thus access stereocomplementary bioreduction over the last decade (2009-2020) was then reviewed and discussed, which might give new insights into the mining and engineering of related biocatalysts. KEY POINTS: • The sequence similarity network of OYEs superfamily was constructed and annotated. • The structures and active sites of OYEs from different classes were compared. • "Left/right" binding mode was used to explain the stereopreferences of OYEs. • Structure-guided engineering of OYEs to switch their stereoselectivity was reviewed.

Indexed as

NADPH DehydrogenaseProtein EngineeringBiocatalysisCatalytic DomainSaccharomycesStereoisomerismSubstrate SpecificityNADPH DehydrogenaseBiocatalysisBiocatalytic reductionOld yellow enzymesProtein engineeringStereopreference switch

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.