Evidence map›Paper›PMID 32827657›Full record

ArticleReproductive toxicology (Elmsford, N.Y.)2020

The multi-dimensional embryonic zebrafish platform predicts flame retardant bioactivity.

Lisa Truong, Skylar Marvel, David M Reif, Dennis G Thomas, Paritosh Pande, Subham Dasgupta, Michael T Simonich, Katrina M Waters, Robyn L Tanguay

Open access · hybridAbstract read
In one paragraph

Article in Reproductive toxicology (Elmsford, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

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  7. A Comparative Multi-System Approach to Characterizing Bioactivity of Commonly Occurring Chemicals.International journal of environmental research and public health · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Lisa TruongDepartment of Environmental and Molecular Toxicology, the Sinnhuber Aquatic Research Laboratory and the Environmental Health Sciences Center at Oregon State University, Corvallis, OR, USA.
Skylar MarvelBioinformatics Research Center, Department of Biological Sciences, North Carolina State University, Raleigh, NC, USA.
David M ReifBioinformatics Research Center, Department of Biological Sciences, North Carolina State University, Raleigh, NC, USA.
Dennis G ThomasBiological Sciences Division, Pacific Northwest Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, WA 99352 USA.
Paritosh PandeBiological Sciences Division, Pacific Northwest Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, WA 99352 USA.
Subham DasguptaDepartment of Environmental and Molecular Toxicology, the Sinnhuber Aquatic Research Laboratory and the Environmental Health Sciences Center at Oregon State University, Corvallis, OR, USA.
Michael T SimonichDepartment of Environmental and Molecular Toxicology, the Sinnhuber Aquatic Research Laboratory and the Environmental Health Sciences Center at Oregon State University, Corvallis, OR, USA.
Katrina M WatersDepartment of Environmental and Molecular Toxicology, the Sinnhuber Aquatic Research Laboratory and the Environmental Health Sciences Center at Oregon State University, Corvallis, OR, USA; Biological Sciences Division, Pacific Northwest Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, WA 99352 USA.
Robyn L TanguayDepartment of Environmental and Molecular Toxicology, the Sinnhuber Aquatic Research Laboratory and the Environmental Health Sciences Center at Oregon State University, Corvallis, OR, USA. Electronic address: Robyn.Tanguay@oregonstate.edu.
Oregon State University · USNorth Carolina State University · USPacific Northwest National Laboratory · US

Funding

Research Experience and Training Coordination CoreP42ES016465 · NIEHS · OREGON STATE UNIVERSITY · PI Robyn L Tanguay · 2009 to 2026
$52.5M
Reducing Susceptibility to Environmental Stress Throughout the Life SpanP30ES000210 · NIEHS · OREGON STATE UNIVERSITY · PI BECKMAN, JOSEPH S · 1985 to 2015
$21.4M
Zebrafish Biomedical Research Facility CoreP30ES030287 · NIEHS · OREGON STATE UNIVERSITY · PI Molly L Kile · 2020 to 2026
$9.8M
Gene-Environment Interactions Causing Differential Susceptibility to Chemical Exposure in High-Throughput ScreeningR56ES030007 · NIEHS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI REIF, DAVID M · 2019 to 2019
$225k
NIEHS NIH HHS P30 ES000210NIEHS NIH HHS P30 ES030287NIEHS NIH HHS P42 ES016465NIEHS NIH HHS R56 ES030007
6 · The paper itself

Abstract

Flame retardant chemicals (FRCs) commonly added to many consumer products present a human exposure burden associated with adverse health effects. Under pressure from consumers, FRC manufacturers have adopted some purportedly safer replacements for first-generation brominated diphenyl ethers (BDEs). In contrast, second and third-generation organophosphates and other alternative chemistries have limited bioactivity data available to estimate their hazard potential. In order to evaluate the toxicity of existing and potential replacement FRCs, we need efficient screening methods. We built a 61-FRC library in which we systemically assessed developmental toxicity and potential neurotoxicity effects in the embryonic zebrafish model. Data were compared to publicly available data generated in a battery of cell-based in vitro assays from ToxCast, Tox21, and other alternative models. Of the 61 FRCs, 19 of 45 that were tested in the ToxCast assays were bioactive in our zebrafish model. The zebrafish assays detected bioactivity for 10 of the 12 previously classified developmental neurotoxic FRCs. Developmental zebrafish were sufficiently sensitive at detecting FRC structure-bioactivity impacts that we were able to build a classification model using 13 physicochemical properties and 3 embryonic zebrafish assays that achieved a balanced accuracy of 91.7%. This work illustrates the power of a multi-dimensional in vivo platform to expand our ability to predict the hazard potential of new compounds based on structural relatedness, ultimately leading to reliable toxicity predictions based on chemical structure.

Indexed as

AnimalsEmbryonic DevelopmentEmbryo, NonmammalianFlame RetardantsModels, AnimalNeurotoxicity SyndromesRisk AssessmentStructure-Activity RelationshipTeratogensZebrafishFlame RetardantsTeratogensBenchmark doseClassification modelDevelopmental toxicityFlame retardantsLowest effect concentrationNeurotoxicity

Identifiers

PMID32827657
PMCPMC7892636
OpenAlexW3065086691

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.