Evidence map›Paper›PMID 32823970›Full record

ArticleInternational journal of molecular sciences2020

Deep Learning Modeling of Androgen Receptor Responses to Prostate Cancer Therapies.

Oliver Snow, Nada Lallous, Martin Ester, Artem Cherkasov

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Simulating androgen receptor selection in designer yeast.Synthetic and systems biotechnology · 2022
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Oliver SnowSchool of Computing Science, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.ORCID 0000-0001-5051-1771
Nada LallousVancouver Prostate Centre, University of British Columbia, 2660 Oak St, Vancouver, BC V6H 3Z6, Canada.ORCID 0000-0002-8665-8641
Martin EsterSchool of Computing Science, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
Artem CherkasovVancouver Prostate Centre, University of British Columbia, 2660 Oak St, Vancouver, BC V6H 3Z6, Canada.
Simon Fraser University · CAUniversity of British Columbia · CA

Funding

CIHR 20R12071U.S. Department of Defense 20R77766
6 · The paper itself

Abstract

Gain-of-function mutations in human androgen receptor (AR) are among the major causes of drug resistance in prostate cancer (PCa). Identifying mutations that cause resistant phenotype is of critical importance for guiding treatment protocols, as well as for designing drugs that do not elicit adverse responses. However, experimental characterization of these mutations is time consuming and costly; thus, predictive models are needed to anticipate resistant mutations and to guide the drug discovery process. In this work, we leverage experimental data collected on 68 AR mutants, either observed in the clinic or described in the literature, to train a deep neural network (DNN) that predicts the response of these mutants to currently used and experimental anti-androgens and testosterone. We demonstrate that the use of this DNN, with general 2D descriptors, provides a more accurate prediction of the biological outcome (inhibition, activation, no-response, mixed-response) in AR mutant-drug pairs compared to other machine learning approaches. Finally, the developed approach was used to make predictions of AR mutant response to the latest AR inhibitor darolutamide, which were then validated by in-vitro experiments.

Indexed as

Deep LearningAndrogen Receptor AntagonistsCell Line, TumorHumansMaleMutationNeural Networks, ComputerProstatic NeoplasmsReceptors, AndrogenROC CurveTranscription, GeneticAndrogen Receptor AntagonistsReceptors, Androgenandrogen receptordeep learningprostate cancerproteochemometrics

Identifiers

PMID32823970
PMCPMC7461580
OpenAlexW3049361936

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.