Evidence map›Paper›PMID 32822427›Full record

ArticlePloS one2020

Spectrum of clinical features and genetic variants in mevalonate kinase (MVK) gene of South Indian families suffering from Hyperimmunoglobulin D Syndrome.

Geeta Madathil Govindaraj, Abhinav Jain, Geetha Peethambaran, Rahul C Bhoyar, Shamsudheen Karuthedath Vellarikkal, Arvind Ganapati, Pulukool Sandhya, Athulya Edavazhippurath, Dhananjayan Dhanasooraj, Jayakrishnan Machinary Puthenpurayil and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Geeta Madathil GovindarajDepartment of Pediatrics, Government Medical College Kozhikode, Kozhikode, India.
Abhinav JainCSIR-Institute of Genomics and Integrative Biology, New Delhi, Delhi, India.
Geetha PeethambaranDepartment of Pediatrics, Government Medical College Kozhikode, Kozhikode, India.
Rahul C BhoyarCSIR-Institute of Genomics and Integrative Biology, New Delhi, Delhi, India.
Shamsudheen Karuthedath VellarikkalCSIR-Institute of Genomics and Integrative Biology, New Delhi, Delhi, India.
Arvind GanapatiDepartment of Rheumatology, Christian Medical College, Vellore, India.
Pulukool SandhyaDepartment of Rheumatology, Christian Medical College, Vellore, India.
Athulya EdavazhippurathDepartment of Pediatrics, Government Medical College Kozhikode, Kozhikode, India.
Dhananjayan DhanasoorajMultidisciplinary Research Unit, Government College Kozhikode, Kozhikode, India.
Jayakrishnan Machinary PuthenpurayilDepartment of Pediatrics, Government Medical College Kozhikode, Kozhikode, India.
Krishnan ChakkiyarDepartment of Pediatrics, Government Medical College Kozhikode, Kozhikode, India.
Anushree MishraCSIR-Institute of Genomics and Integrative Biology, New Delhi, Delhi, India.
Arushi BatraCSIR-Institute of Genomics and Integrative Biology, New Delhi, Delhi, India.
Anu PunnenDepartment of Pediatrics, Christian Medical College, Vellore, India.
Sathish KumarDepartment of Pediatrics, Christian Medical College, Vellore, India.
Sridhar SivasubbuCSIR-Institute of Genomics and Integrative Biology, New Delhi, Delhi, India.
Vinod ScariaCSIR-Institute of Genomics and Integrative Biology, New Delhi, Delhi, India.ORCID 0000-0001-7644-7181
Institute of Genomics and Integrative Biology · INGovernment Medical College · INChristian Medical College, Vellore · INGovernment College Kodanchery · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hyper-IgD syndrome (HIDS, OMIM #260920) is a rare autosomal recessive autoinflammatory disorder caused by pathogenic variants in the mevalonate kinase (MVK) gene. HIDS has an incidence of 1:50,000 to 1:5,000, and is thought to be prevalent mainly in northern Europe. Here, we report a case series of HIDS from India, which includes ten patients from six families who presented with a wide spectrum of clinical features such as recurrent fever, oral ulcers, rash, arthritis, recurrent diarrhea, hepatosplenomegaly, and high immunoglobulin levels. Using whole exome sequencing (WES) and/or Sanger capillary sequencing, we identified five distinct genetic variants in the MVK gene from nine patients belonging to six families. The variants were classified as pathogenic or likely pathogenic as per the American College of Medical Genetics and Genomics and the Association for Molecular Pathology (ACMG-AMP) guidelines for annotation of sequence variants. Over 70% of patients in the present study had two recurrent mutations in MVK gene i.e. a nonsynonymous variant p.V377I, popularly known as the 'Dutch mutation', along with a splicing variant c.226+2delT in a compound heterozygous form. Identity by descent analysis in two patients with the recurrent variants identified a 6.7 MB long haplotype suggesting a founder effect in the South Indian population. Our analysis suggests that a limited number of variants account for the majority of the patients with HIDS in South India. This has implications in clinical diagnosis, as well as in the development of cost-effective approaches for genetic diagnosis and screening. To our best knowledge, this is the first and most comprehensive case series of clinically and genetically characterized patients with HIDS from India.

Indexed as

AdolescentAsian PeopleChild, PreschoolExome SequencingFemaleGene DeletionGenetic Association StudiesHaplotypesHeterozygoteHumansIndiaInfantMaleMevalonate Kinase DeficiencyPedigreePhosphotransferases (Alcohol Group Acceptor)mevalonate kinasePhosphotransferases (Alcohol Group Acceptor)

Identifiers

PMID32822427
PMCPMC7442240
OpenAlexW3080530194

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.