Evidence map›Paper›PMID 32821471›Full record

ArticleTranslational vision science & technology2020

A Deep-Learning Approach for Automated OCT En-Face Retinal Vessel Segmentation in Cases of Optic Disc Swelling Using Multiple En-Face Images as Input.

Mohammad Shafkat Islam, Jui-Kai Wang, Samuel S Johnson, Matthew J Thurtell, Randy H Kardon, Mona K Garvin

Abstract read
In one paragraph

Article in Translational vision science & technology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Review
  3. Cardiac Adipose Tissue Segmentation via Image-Level Annotations.IEEE journal of biomedical and health informatics · 2023
    Article
  4. The use of deep learning technology for the detection of optic neuropathy.Quantitative imaging in medicine and surgery · 2022
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mohammad Shafkat IslamDepartment of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, USA.
Jui-Kai WangDepartment of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, USA.
Samuel S JohnsonDepartment of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, USA.
Matthew J ThurtellDepartment of Ophthalmology and Visual Sciences, University of Iowa, Iowa City, IA, USA.
Randy H KardonIowa City VA Health Care System and Iowa City VA Center for the Prevention and Treatment of Visual Loss, Iowa City, IA, USA.
Mona K GarvinDepartment of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, USA.

Funding

3D Image Analysis Approach to Determine Severity and Cause of Optic Nerve EdemaR01EY023279 · NEI · UNIVERSITY OF IOWA · PI GARVIN, MONA K. · 2013 to 2017
$1.7M
Automated Assessment of Optic Nerve Edema with Low-Cost ImagingI01RX001786 · VA · IOWA CITY VA MEDICAL CENTER · PI GARVIN, MONA K. · 2016 to 2020
–
Center for the Prevention and Treatment of Visual LossI50RX003002 · VA · IOWA CITY VA MEDICAL CENTER · PI RANDY H. KARDON, MARKUS H. KUEHN · 2019 to 2026
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NEI NIH HHS R01 EY023279RRD VA I01 RX001786RRD VA I50 RX003002
6 · The paper itself

Abstract

Purpose: In cases of optic disc swelling, segmentation of projected retinal blood vessels from optical coherence tomography (OCT) volumes is challenging due to swelling-based shadowing artifacts. Based on our hypothesis that simultaneously considering vessel information from multiple projected retinal layers can substantially increase vessel visibility, in this work, we propose a deep-learning-based approach to segment vessels involving the simultaneous use of three OCT en-face images as input. Methods: A human expert vessel tracing combining information from OCT en-face images of the retinal pigment epithelium (RPE), inner retina, and total retina as well as a registered fundus image served as the reference standard. The deep neural network was trained from the imaging data from 18 patients with optic disc swelling to output a vessel probability map from three OCT en-face input images. The vessels from the OCT en-face images were also manually traced in three separate stages to compare with the performance of the proposed approach. Results: On an independent volume-matched test set of 18 patients, the proposed deep-learning-based approach outperformed the three OCT-based manual tracing stages. The manual tracing based on three OCT en-face images also outperformed the manual tracing using only the traditional RPE en-face image. Conclusions: In cases of optic disc swelling, use of multiple en-face images enables better vessel segmentation when compared with the traditional use of a single en-face image. Translational Relevance: Improved vessel segmentation approaches in cases of optic disc swelling can be used as features for an improved assessment of the severity and cause of the swelling.

Indexed as

Deep LearningOptic DiskPapilledemaRetinal VesselsHumansTomography, Optical Coherencedeep learningmultiple en-face imagesoptical coherence tomographyoptic disc swellingpapilledemaretinal blood vesselsU-Netvessel segmentation

Identifiers

PMID32821471
PMCPMC7401896

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.