Evidence map›Paper›PMID 32820749›Full record

ArticleThe Analyst2020

Long-term dry storage of enzyme-based reagents for isothermal nucleic acid amplification in a porous matrix for use in point-of-care diagnostic devices.

Sujatha Kumar, Ryan Gallagher, Josh Bishop, Enos Kline, Joshua Buser, Lisa Lafleur, Kamal Shah, Barry Lutz, Paul Yager

Open access · greenAbstract read
In one paragraph

Article in The Analyst, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Advances in methods for rapid detection of Staphylococcus aureus and methicillin-resistant S. aureus.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2025
    Review
  3. Rapid and Cost-EffectiveDiagnostics (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Sujatha KumarDepartment of Bioengineering, University of Washington, 3720 15th Ave NE, Seattle, Washington, USA. sujathar@uw.edu.
Ryan Gallagher
Josh Bishop
Enos Kline
Joshua Buser
Lisa Lafleur
Kamal Shah
Barry Lutz
Paul Yager
University of Washington · US

Funding

HIVAcute: rapid sample-to-result self-testing for HIV RNAR33AI147354 · NIAID · UNIVERSITY OF WASHINGTON · PI YAGER, PAUL · 2022 to 2023
$1.5M
HIVAcute: rapid sample-to-result self-testing for HIV RNAR61AI147354 · NIAID · UNIVERSITY OF WASHINGTON · PI YAGER, PAUL · 2019 to 2021
$1.3M
NIAID NIH HHS R33 AI147354NIAID NIH HHS R61 AI147354
6 · The paper itself

Abstract

Nucleic acid amplification test (NAAT)-based point-of-care (POC) devices are rapidly growing for use in low-resource settings. However, key challenges are the ability to store the enzyme-based reagents in dry form in the device and the long-term stability of those reagents at elevated temperatures, especially where ambient temperatures could be as high as 45 °C. Here, we describe a set of excipients including a combination of trehalose, polyethylene glycol and dextran, and a method for using them that allows long-term dry storage of enzyme-based reagents for an isothermal strand displacement amplification (iSDA) reaction in a porous matrix. Various porous materials, including nitrocellulose, cellulose, and glass fiber, were tested. Co-dried reagents for iSDA always included those that amplified the ldh1 gene in Staphylococcus aureus (a polymerase and a nicking enzyme, 4 primers, dNTPs and a buffer). Reagents also either included a capture probe and a streptavidin-Au label required for lateral flow (LF) detection after amplification, or a fluorescent probe used for real-time detection. The reagents showed the best stability in a glass fiber matrix when stored in the presence of 10% trehalose and 2.5% dextran. The reagents were stable for over a year at ∼22 °C as determined by lateral flow detection and gel electrophoresis. The reagents also exhibited excellent stability after 360 h at 45 °C; the assay still detected as few as 10 copies of ldh1 gene target by lateral flow detection, and 50 copies with real-time fluorescence detection. These results demonstrate the potential for incorporation of amplification reagents in dry form in point-of-care devices for use in a wide range of settings.

Indexed as

Nucleic AcidsPoint-of-Care SystemsIndicators and ReagentsNucleic Acid Amplification TechniquesPoint-of-Care TestingPorosityIndicators and ReagentsNucleic Acids

Identifiers

PMID32820749
PMCPMC10335280
OpenAlexW3056842677

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.