Evidence map›Paper›PMID 32820229›Full record

ArticleThe ISME journal2020

Gammaproteobacteria mediating utilization of methyl-, sulfur- and petroleum organic compounds in deep ocean hydrothermal plumes.

Zhichao Zhou, Yang Liu, Jie Pan, Brandi R Cron, Brandy M Toner, Karthik Anantharaman, John A Breier, Gregory J Dick, Meng Li

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 71 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Zhichao ZhouShenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, 518060, China.ORCID http://orcid.org/0000-0002-9120-6762
Yang LiuShenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, 518060, China.ORCID http://orcid.org/0000-0002-1109-0756
Jie PanShenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, 518060, China.ORCID http://orcid.org/0000-0002-7431-9837
Brandi R CronDepartment of Earth and Environmental Sciences, University of Minnesota Twin Cities, Minneapolis, MN, 55455, USA.
Brandy M TonerDepartment of Earth and Environmental Sciences, University of Minnesota Twin Cities, Minneapolis, MN, 55455, USA.
Karthik AnantharamanDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID http://orcid.org/0000-0002-9584-2491
John A BreierSchool of Earth, Environmental, and Marine Sciences, The University of Texas Rio Grande Valley, Edinburg, TX, 78539, USA.ORCID http://orcid.org/0000-0002-3591-5548
Gregory J DickDepartment of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0001-7666-6288
Meng LiShenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, 518060, China. limeng848@szu.edu.cn.ORCID http://orcid.org/0000-0001-8675-0758
Shenzhen University · CNUniversity of Minnesota · USUniversity of Wisconsin–Madison · USThe University of Texas Rio Grande Valley · USUniversity of Michigan · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Deep-sea hydrothermal plumes are considered natural laboratories for understanding ecological and biogeochemical interactions. Previous studies focused on interactions between microorganisms and inorganic, reduced hydrothermal inputs including sulfur, hydrogen, iron, and manganese. However, little is known about transformations of organic compounds, especially methylated, sulfur-containing compounds, and petroleum hydrocarbons. Here, we reconstructed nine gammaproteobacterial metagenome-assembled genomes, affiliated with Methylococcales, Methylophaga, and Cycloclasticus, from three hydrothermal ecosystems. We present evidence that these three groups have high transcriptional activities of genes encoding cycling of C

Indexed as

GammaproteobacteriaHydrothermal VentsPetroleumEcosystemOceans and SeasPhylogenyPiscirickettsiaceaeSeawaterSulfurPetroleumSulfur

Identifiers

PMID32820229
PMCPMC7784996
OpenAlexW3078691262

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.