Evidence map›Paper›PMID 32820073›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle.

Nico J Claassens, Giovanni Scarinci, Axel Fischer, Avi I Flamholz, William Newell, Stefan Frielingsdorf, Oliver Lenz, Arren Bar-Even

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
  2. Article
  3. In vivo directed evolution of an ultrafast Rubisco from a semianaerobic environment imparts oxygen resistance.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. Removal of phosphoglycolate in hyperthermophilic archaea.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Novel endolithic bacteria of phylumApplied and environmental microbiology · 2024
    Article
  8. Article
  9. Trajectories for the evolution of bacterial COProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. The reliance of glycerol utilization by Cupriavidus necator on COApplied microbiology and biotechnology · 2022
    Article
  11. Biosynthetic approaches to efficient assimilation of COFrontiers in bioengineering and biotechnology · 2022
    Review
  12. Article
  13. Aerobic Utilization of Methanol for Microbial Growth and Production.Advances in biochemical engineering/biotechnology · 2022
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Nico J ClaassensSystems and Synthetic Metabolism Lab, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.ORCID 0000-0003-1593-0377
Giovanni ScarinciSystems and Synthetic Metabolism Lab, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.ORCID 0000-0001-9094-5195
Axel FischerSystems and Synthetic Metabolism Lab, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.ORCID 0000-0001-6130-6984
Avi I FlamholzDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.ORCID 0000-0002-9278-5479
William NewellSystems and Synthetic Metabolism Lab, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.
Stefan FrielingsdorfInstitut für Chemie, Physikalische Chemie, Technische Universität Berlin, 10623 Berlin, Germany.ORCID 0000-0002-4141-7836
Oliver LenzInstitut für Chemie, Physikalische Chemie, Technische Universität Berlin, 10623 Berlin, Germany.ORCID 0000-0003-4550-5128
Arren Bar-EvenSystems and Synthetic Metabolism Lab, Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany; Bar-Even@mpimp-golm.mpg.de.ORCID 0000-0002-1039-4328
Max Planck Institute of Molecular Plant Physiology · DETechnische Universität Berlin · DEUniversity of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carbon fixation via the Calvin cycle is constrained by the side activity of Rubisco with dioxygen, generating 2-phosphoglycolate. The metabolic recycling of phosphoglycolate was extensively studied in photoautotrophic organisms, including plants, algae, and cyanobacteria, where it is referred to as photorespiration. While receiving little attention so far, aerobic chemolithoautotrophic bacteria that operate the Calvin cycle independent of light must also recycle phosphoglycolate. As the term photorespiration is inappropriate for describing phosphoglycolate recycling in these nonphotosynthetic autotrophs, we suggest the more general term "phosphoglycolate salvage." Here, we study phosphoglycolate salvage in the model chemolithoautotroph

Indexed as

Acetyl Coenzyme ABacterial ProteinsCarbon CycleChemoautotrophic GrowthCupriavidus necatorGlycolatesMalatesMalate SynthaseOxidation-ReductionPhotosynthesisAcetyl Coenzyme ABacterial ProteinsGlycolatesMalatesMalate Synthasemalic acidphosphoglycolateCO2 fixationglycolate oxidationglycolate secretionhydrogen-oxidizing bacteriamalate synthase

Identifiers

PMID32820073
PMCPMC7486775
OpenAlexW3081317161

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.