Evidence map›Paper›PMID 32820006›Full record

ArticleGenome research2020

Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma.

Raquel Ordoñez, Marta Kulis, Nuria Russiñol, Vicente Chapaprieta, Arantxa Carrasco-Leon, Beatriz García-Torre, Stella Charalampopoulou, Guillem Clot, Renée Beekman, Cem Meydan and 29 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 14 institutions in 5 countries.

Raquel OrdoñezCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Marta KulisFundació Clínic per a la Recerca Biomèdica, 08036 Barcelona, Spain.
Nuria RussiñolFundació Clínic per a la Recerca Biomèdica, 08036 Barcelona, Spain.
Vicente ChapaprietaDepartamento de Fundamentos Clínicos, Universitat de Barcelona, 08036 Barcelona, Spain.
Arantxa Carrasco-LeonCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Beatriz García-TorreInstitut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), 08036 Barcelona, Spain.
Stella CharalampopoulouInstitut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), 08036 Barcelona, Spain.
Guillem ClotCentro de Investigación Biomédica en Red de Cáncer, CIBERONC, 28029 Madrid, Spain.
Renée BeekmanCentro de Investigación Biomédica en Red de Cáncer, CIBERONC, 28029 Madrid, Spain.
Cem MeydanDivision of Hematology/Oncology, Department of Medicine, Weill Cornell Medical College, New York, New York 10021, USA.
Martí Duran-FerrerInstitut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), 08036 Barcelona, Spain.
Núria Verdaguer-DotInstitut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), 08036 Barcelona, Spain.
Roser Vilarrasa-BlasiInstitut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), 08036 Barcelona, Spain.
Paula Soler-VilaInstitut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), 08036 Barcelona, Spain.
Leire GarateCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Estíbaliz MirandaCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Edurne San José-EnérizCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Juan R Rodriguez-MadozCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Teresa EzpondaCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Rebeca Martínez-TurrilasCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Amaia Vilas-ZornozaCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
David Lara-AstiasoCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Daphné Dupéré-RicherDivision of Hematology/Oncology, University of Florida Health Cancer Center, Gainesville, Florida 32610, USA.
Joost H A MartensRadboud Institute for Molecular Life Sciences, 6525 GA Nijmegen, Netherlands.
Halima El-OmriDepartment of Hematology & BMT, Hamad Medical Corporation, NCCCR, Doha, Qatar.
Ruba Y TahaDepartment of Hematology & BMT, Hamad Medical Corporation, NCCCR, Doha, Qatar.
Maria J CalasanzCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Bruno PaivaCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Jesus San MiguelCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Paul FlicekEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton CB10 1SD, United Kingdom.
Ivo GutCNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08028 Barcelona, Spain.ORCID 0000-0001-7219-632X
Ari MelnickDivision of Hematology/Oncology, Department of Medicine, Weill Cornell Medical College, New York, New York 10021, USA.
Constantine S MitsiadesDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 02215, USA.
Jonathan D LichtDivision of Hematology/Oncology, University of Florida Health Cancer Center, Gainesville, Florida 32610, USA.
Elias CampoCentro de Investigación Biomédica en Red de Cáncer, CIBERONC, 28029 Madrid, Spain.
Hendrik G StunnenbergRadboud Institute for Molecular Life Sciences, 6525 GA Nijmegen, Netherlands.
Xabier AgirreCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Felipe ProsperCentro de Investigación Médica Aplicada (CIMA), IDISNA, 31008 Pamplona, Spain.
Jose I Martin-SuberoCentro de Investigación Biomédica en Red de Cáncer, CIBERONC, 28029 Madrid, Spain.
Centro de Investigación Biomédica en Red de Cáncer · ESChartered Institute of Management Accountants · GBConsorci Institut D'Investigacions Biomediques August Pi I Sunyer · ESClinica Universidad de Navarra · ESFundació Clínic per a la Recerca Biomèdica · ESCornell University · USNational Center for Cancer Care and Research · QARadboud University Nijmegen · NLUniversity of Florida Health · USCentre for Genomic Regulation · ESEuropean Bioinformatics Institute · GBHarvard University · USInstitució Catalana de Recerca i Estudis Avançats · ESUniversitat de Barcelona · ES

Funding

UTX, MLL AND PATHOGENIC DEREGULATION OF HISTONE METHYLATION IN MULTIPLE MYELOMAR01CA180475 · NCI · UNIVERSITY OF FLORIDA · PI LICHT, JONATHAN D. · 2014 to 2020
$1.8M
NCI NIH HHS R01 CA180475
6 · The paper itself

Abstract

Multiple myeloma (MM) is a plasma cell neoplasm associated with a broad variety of genetic lesions. In spite of this genetic heterogeneity, MMs share a characteristic malignant phenotype whose underlying molecular basis remains poorly characterized. In the present study, we examined plasma cells from MM using a multi-epigenomics approach and demonstrated that, when compared to normal B cells, malignant plasma cells showed an extensive activation of regulatory elements, in part affecting coregulated adjacent genes. Among target genes up-regulated by this process, we found members of the NOTCH, NF-kB, MTOR signaling, and TP53 signaling pathways. Other activated genes included sets involved in osteoblast differentiation and response to oxidative stress, all of which have been shown to be associated with the MM phenotype and clinical behavior. We functionally characterized MM-specific active distant enhancers controlling the expression of thioredoxin (

Indexed as

Gene Expression Regulation, NeoplasticCell LineChromatinDNA-Binding ProteinsEpigenesis, GeneticHumansMultiple MyelomaNF-kappa BOsteogenesisPlasma CellsReceptors, NotchSignal TransductionThioredoxinsTOR Serine-Threonine KinasesTranscription FactorsTumor Suppressor Protein p53ChromatinDNA-Binding ProteinsMTOR protein, humanNF-kappa BPRDM5 protein, humanReceptors, NotchThioredoxinsTOR Serine-Threonine KinasesTP53 protein, humanTranscription FactorsTumor Suppressor Protein p53

Identifiers

PMID32820006
PMCPMC7545147
OpenAlexW3080778103

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.