Evidence map›Paper›PMID 32818150›Full record

ArticleNPJ breast cancer2020

Using whole-genome sequencing data to derive the homologous recombination deficiency scores.

Xavier M de Luca, Felicity Newell, Stephen H Kazakoff, Gunter Hartel, Amy E McCart Reed, Oliver Holmes, Qinying Xu, Scott Wood, Conrad Leonard, John V Pearson and 4 more

Abstract read
In one paragraph

Article in NPJ breast cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
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  9. Article
  10. Article
  11. Review
  12. BiallelicJCO precision oncology · 2023
    Article
  13. RAD51 Foci as a Biomarker Predictive of Platinum Chemotherapy Response in Ovarian Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article
  14. Article
  15. Article
  16. Article
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  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Xavier M de LucaCentre for Clinical Research, Faculty of Medicine, The University of Queensland, Brisbane, QLD Australia.
Felicity NewellQIMR Berghofer Medical Research Institute, Brisbane, QLD Australia.
Stephen H KazakoffQIMR Berghofer Medical Research Institute, Brisbane, QLD Australia.ORCID 0000-0001-6562-1383
Gunter HartelQIMR Berghofer Medical Research Institute, Brisbane, QLD Australia.ORCID 0000-0002-5454-6450
Amy E McCart ReedCentre for Clinical Research, Faculty of Medicine, The University of Queensland, Brisbane, QLD Australia.ORCID 0000-0001-5387-2791
Oliver HolmesQIMR Berghofer Medical Research Institute, Brisbane, QLD Australia.
Qinying XuQIMR Berghofer Medical Research Institute, Brisbane, QLD Australia.
Scott WoodQIMR Berghofer Medical Research Institute, Brisbane, QLD Australia.
Conrad LeonardQIMR Berghofer Medical Research Institute, Brisbane, QLD Australia.ORCID 0000-0002-4131-2065
John V PearsonQIMR Berghofer Medical Research Institute, Brisbane, QLD Australia.
Sunil R LakhaniCentre for Clinical Research, Faculty of Medicine, The University of Queensland, Brisbane, QLD Australia.
Nicola WaddellQIMR Berghofer Medical Research Institute, Brisbane, QLD Australia.ORCID 0000-0002-3950-2476
Katia Nones *QIMR Berghofer Medical Research Institute, Brisbane, QLD Australia.
Peter T Simpson *Centre for Clinical Research, Faculty of Medicine, The University of Queensland, Brisbane, QLD Australia.ORCID 0000-0002-4816-8289

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The homologous recombination deficiency (HRD) score was developed using whole-genome copy number data derived from arrays as a way to infer deficiency in the homologous recombination DNA damage repair pathway (in particular

Indexed as

Breast cancerCancer genomicsMedical genomicsTumour biomarkers

Identifiers

PMID32818150
PMCPMC7414867

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.