Evidence map›Paper›PMID 32818061›Full record

ArticleCell discovery2020

An in vivo strategy for knockdown of circular RNAs.

Nagarjuna Reddy Pamudurti, Ines Lucia Patop, Aishwarya Krishnamoorthy, Reut Ashwal-Fluss, Osnat Bartok, Sebastian Kadener

Open access · goldAbstract read
In one paragraph

Article in Cell discovery, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
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  4. Review
  5. Molecular therapy. Nucleic acids · 2024
    Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Silencing mouse circular RNA circSlc8a1 by circular antisense cA-circSlc8a1 induces cardiac hepatopathy.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Article
  14. Article
  15. Circular RNAs and Untranslated Regions in Acute Myeloid Leukemia.International journal of molecular sciences · 2023
    Review
  16. Review
  17. Article
  18. Circular RNAs in cardiovascular diseases.Pharmacology & therapeutics · 2022
    Review
  19. Review
  20. Emerging roles of circular RNAs in liver cancer.JHEP reports : innovation in hepatology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Nagarjuna Reddy Pamudurti *Biology Department, Brandeis University, Waltham, MA 02454 USA.ORCID 0000-0001-9527-1118
Ines Lucia Patop *Biology Department, Brandeis University, Waltham, MA 02454 USA.
Aishwarya KrishnamoorthyBiology Department, Brandeis University, Waltham, MA 02454 USA.
Reut Ashwal-FlussBiological Chemistry Department, Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel.
Osnat BartokBiological Chemistry Department, Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel.
Sebastian KadenerBiology Department, Brandeis University, Waltham, MA 02454 USA.
Brandeis University · USHebrew University of Jerusalem · IL

Funding

Uncovering the links between circRNA accumulation, translation and agingR01AG057700 · NIA · BRANDEIS UNIVERSITY · PI KADENER, SEBASTIAN, MARR, MICHAEL THOMAS · 2018 to 2022
$3.4M
Unraveling regulatory functions of circRNAs at the muscleblind locusR01GM124406 · NIGMS · BRANDEIS UNIVERSITY · PI Sebastian Kadener · 2017 to 2026
$2.4M
Mechanisms underlying disruption of intestinal epithelial barrier in critical illnessR01GM122406 · NIGMS · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI TAN, XIAO-DI · 2017 to 2018
$594k
NIA NIH HHS R01 AG057700NIGMS NIH HHS R01 GM122406NIGMS NIH HHS R01 GM124406
6 · The paper itself

Abstract

Exonic circular RNAs (circRNAs) are highly abundant RNAs generated mostly from exons of protein-coding genes. Assaying the functions of circRNAs is not straightforward as common approaches for circRNA depletion tend to also alter the levels of mRNAs generated from the hosting gene. Here we describe a methodology for specific knockdown of circRNAs in vivo with tissue and cell resolution. We also describe an experimental and computational platform for determining the potential off-target effects as well as for verifying the obtained phenotypes. Briefly, we utilize shRNAs targeted to the circRNA-specific back-splice junction to specifically downregulate the circRNA. We utilized this methodology to downregulate five circRNAs that are highly expressed in

Indexed as

Non-coding RNAsRNA metabolism

Identifiers

PMID32818061
PMCPMC7417560
OpenAlexW3048731427

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.