Evidence map›Paper›PMID 32817484›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Single-molecule diffusometry reveals no catalysis-induced diffusion enhancement of alkaline phosphatase as proposed by FCS experiments.

Zhijie Chen, Alan Shaw, Hugh Wilson, Maxime Woringer, Xavier Darzacq, Susan Marqusee, Quan Wang, Carlos Bustamante

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
7.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
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  8. Mechanism of ADP-Inhibited ATP Hydrolysis in Single Proton-Pumping FInternational journal of molecular sciences · 2023
    Article
  9. Article
  10. Review
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  12. Article
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  15. Review
  16. A thermodynamic perspective on enhanced enzyme diffusion.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Master curve of boosted diffusion for 10 catalytic enzymes.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Zhijie ChenInstitute for Quantitative Biosciences, University of California, Berkeley, CA 94720.ORCID 0000-0003-1376-5750
Alan ShawInstitute for Quantitative Biosciences, University of California, Berkeley, CA 94720.ORCID 0000-0001-6856-6033
Hugh WilsonLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544.
Maxime WoringerDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.ORCID 0000-0003-2581-9808
Xavier DarzacqDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Susan MarquseeInstitute for Quantitative Biosciences, University of California, Berkeley, CA 94720; marqusee@berkeley.edu quanw@princeton.edu carlosb@berkeley.edu.
Quan WangLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544; marqusee@berkeley.edu quanw@princeton.edu carlosb@berkeley.edu.ORCID 0000-0001-7692-6721
Carlos BustamanteInstitute for Quantitative Biosciences, University of California, Berkeley, CA 94720; marqusee@berkeley.edu quanw@princeton.edu carlosb@berkeley.edu.ORCID 0000-0002-2970-0073
QB3 · USPrinceton University · USCalifornia Institute for Regenerative Medicine · USInstitut Pasteur · FR

Funding

THE PHYSICAL CHEMISTRY OF NUCLEIC ACIDSR01GM032543 · NIGMS · UNIVERSITY OF OREGON · PI CARLOS Jose BUSTAMANTE · 1985 to 2026
$6.4M
Tools For Imaging the Functional Genome in Living Cells and TissuesU01EB021236 · NIBIB · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DARZACQ, XAVIER, SINGER, ROBERT H · 2015 to 2017
$2.5M
Tools For Imaging the Functional Genome in Living Cells and TissuesU01DA047729 · NIDA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DARZACQ, XAVIER, SINGER, ROBERT H · 2018 to 2019
$1.7M
Howard Hughes Medical InstituteNIBIB NIH HHS U01 EB021236NIDA NIH HHS U01 DA047729NIGMS NIH HHS R01 GM032543
6 · The paper itself

Abstract

Theoretical and experimental observations that catalysis enhances the diffusion of enzymes have generated exciting implications about nanoscale energy flow, molecular chemotaxis, and self-powered nanomachines. However, contradictory claims on the origin, magnitude, and consequence of this phenomenon continue to arise. To date, experimental observations of catalysis-enhanced enzyme diffusion have relied almost exclusively on fluorescence correlation spectroscopy (FCS), a technique that provides only indirect, ensemble-averaged measurements of diffusion behavior. Here, using an anti-Brownian electrokinetic (ABEL) trap and in-solution single-particle tracking, we show that catalysis does not increase the diffusion of alkaline phosphatase (ALP) at the single-molecule level, in sharp contrast to the ∼20% enhancement seen in parallel FCS experiments using

Indexed as

DiffusionAlkaline PhosphataseAnimalsCatalysisCattleNitrophenolsOrganophosphorus CompoundsSpectrometry, FluorescenceAlkaline PhosphataseNitrophenolsnitrophenylphosphateOrganophosphorus Compoundsanti-Brownian electrokinetic (ABEL) trapenzyme diffusionfluorescence correlation spectroscopy (FCS)single-molecule diffusometrysingle-particle tracking

Identifiers

PMID32817484
PMCPMC7474647
OpenAlexW3053703934

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.