Evidence map›Paper›PMID 32817335›Full record

ArticleThe Journal of biological chemistry2020

Evaluation of active Rac1 levels in cancer cells: A case of misleading conclusions from immunofluorescence analysis.

Martin J Baker, Mariana Cooke, Gabriel Kreider-Letterman, Rafael Garcia-Mata, Paul A Janmey, Marcelo G Kazanietz

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Martin J BakerDepartment of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA. Electronic address: martin.baker@pennmedicine.upenn.edu.
Mariana CookeDepartment of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA; Department of Medicine, Einstein Medical Center Philadelphia, Philadelphia, Pennsylvania, USA.
Gabriel Kreider-LettermanDepartment of Biological Sciences, University of Toledo, Ohio, USA.
Rafael Garcia-MataDepartment of Biological Sciences, University of Toledo, Ohio, USA.
Paul A JanmeyInstitute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Marcelo G KazanietzDepartment of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA. Electronic address: marcelog@upenn.edu.
Translational Therapeutics (United States) · USUniversity of Toledo · USEinstein Medical Center Philadelphia · USUniversity of Pennsylvania · US

Funding

Protein kinase C and lung carcinogenesisR01ES026023 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI KAZANIETZ, MARCELO G. · 2015 to 2019
$2.3M
Effectors of protein kinase C-mediated tumor progressionR01CA196232 · NCI · UNIVERSITY OF PENNSYLVANIA · PI KAZANIETZ, MARCELO G. · 2016 to 2022
$2.0M
CXCL13: a mediator of prostate cancer progressionR01CA189765 · NCI · UNIVERSITY OF PENNSYLVANIA · PI KAZANIETZ, MARCELO G. · 2015 to 2019
$1.8M
Identification of novel regulators of invadopodia formationR03CA234693 · NCI · UNIVERSITY OF TOLEDO · PI GARCIA-MATA, RAFAEL · 2019 to 2020
$150k
NCI NIH HHS R01 CA189765NCI NIH HHS R01 CA196232NCI NIH HHS R03 CA234693NIEHS NIH HHS R01 ES026023
6 · The paper itself

Abstract

A large number of aggressive cancer cell lines display elevated levels of activated Rac1, a small GTPase widely implicated in cytoskeleton reorganization, cell motility, and metastatic dissemination. A commonly accepted methodological approach for detecting Rac1 activation in cancer cells involves the use of a conformation-sensitive antibody that detects the active (GTP-bound) Rac1 without interacting with the GDP-bound inactive form. This antibody has been extensively used in fixed cell immunofluorescence and immunohistochemistry. Taking advantage of prostate and pancreatic cancer cell models known to have high basal Rac1-GTP levels, here we have established that this antibody does not recognize Rac1 but rather detects the intermediate filament protein vimentin. Indeed, Rac1-null PC3 prostate cancer cells or cancer models with low levels of Rac1 activation still show a high signal with the anti-Rac1-GTP antibody, which is lost upon silencing of vimentin expression. Moreover, this antibody was unable to detect activated Rac1 in membrane ruffles induced by epidermal growth factor stimulation. These results have profound implications for the study of this key GTPase in cancer, particularly because a large number of cancer cell lines with characteristic mesenchymal features show simultaneous up-regulation of vimentin and high basal Rac1-GTP levels when measured biochemically. This misleading correlation can lead to assumptions about the validity of this antibody and inaccurate conclusions that may affect the development of appropriate therapeutic approaches for targeting the Rac1 pathway.

Indexed as

Cell MembraneGuanosine TriphosphateHumansMaleMicroscopy, FluorescenceNeoplasm ProteinsPC-3 CellsProstatic Neoplasmsrac1 GTP-Binding ProteinGuanosine TriphosphateNeoplasm Proteinsrac1 GTP-Binding ProteinRAC1 protein, humancancercancer cellsepithelial-to-mesenchymal transition (EMT)imagingimmunofluorescenceRac1Rac1-GTPRac (Rac GTPase)small GTPase

Identifiers

PMID32817335
PMCPMC7535912
OpenAlexW3049360709

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.