ArticleAntonie van Leeuwenhoek2020
Pan-genome analysis of Paenibacillus polymyxa strains reveals the mechanism of plant growth promotion and biocontrol.
Article in Antonie van Leeuwenhoek, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- Functional diversity and ecological consequences of endophytic Bacillus-plant interactions.Folia microbiologica · 2026Review
- Integrated functional genomics and safety assessment of plant-growth-promoting Caryophanales from post-maize-cultivation soils.BMC genomics · 2026Article
- Whole-genome sequence and functional insights into the salt-tolerant plant growth-promoting bacterium Priestia aryabhattai MS3.BMC genomics · 2026Article
- Genomic insights into the broad-spectrum antifungal activity of a novel Paenibacillus polymyxa strain X-11.BMC microbiology · 2026Article
- Combined genomic and phenomic analyses reveals multifunctionality of Paenibacillus polymyxa K16 for plant's nutrition, growth and health.Scientific reports · 2025Article
- Genomic insights into the antagonistic activity of Paenibacillus brasilensis PB24 against Fusarium oxysporum: implications for biocontrol and plant growth promotion strategies.Functional & integrative genomics · 2025Article
- Advancing sustainable practices withAIMS microbiology · 2025Review
- Investigating the genomic and metabolic abilities of PGPR Pseudomonas fluorescens in promoting plant growth and fire blight management.Molecular genetics and genomics : MGG · 2024Article
- Pangenome analysis ofApplied and environmental microbiology · 2024Article
- Genomic diversity in Paenibacillus polymyxa: unveiling distinct species groups and functional variability.BMC genomics · 2024Article
- Comparative genomics reveals new insights into the evolution of the IncA and IncC family of plasmids.Frontiers in microbiology · 2022Article
- Comparative genomic and functional analyses ofFrontiers in microbiology · 2022Article
- Production, purification, and process optimization of intracellular pigment from novel psychrotolerant Paenibacillus sp. BPW19.Biotechnology reports (Amsterdam, Netherlands) · 2021Article
- Functional Analysis and Genome Mining Reveal High Potential of Biocontrol and Plant Growth Promotion in Nodule-Inhabiting Bacteria WithinFrontiers in microbiology · 2020Article
Corrections and comments
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Authors and funding
5 authors.
Funding
Abstract
Rapid development of gene sequencing technologies has led to an exponential increase in microbial sequencing data. Genome research of a single organism does not capture the changes in the characteristics of genetic information within a species. Pan-genome analysis gives us a broader perspective to study the complete genetic information of a species. Paenibacillus polymyxa is a Gram-positive bacterium and an important plant growth-promoting rhizobacterium with the ability to produce multiple antibiotics, such as fusaricidin, lantibiotic, paenilan, and polymyxin. Our study explores the pan-genome of 14 representative P. polymyxa strains isolated from around the world. Heap's law model and curve fitting confirmed an open pan-genome of P. polymyxa. The phylogenetic and collinearity analyses reflected that the evolutionary classification of P. polymyxa strains are not associated with geographical area and ecological niches. Few genes related to phytohormone synthesis and phosphate solubilization were conserved; however, the nif cluster gene associated with nitrogen fixation exists only in some strains. This finding is indicative of nitrogen fixing ability is not stable in P. polymyxa. Analysis of antibiotic gene clusters in P. polymyxa revealed the presence of these genes in both core and accessory genomes. This observation indicates that the difference in living environment led to loss of ability to synthesize antibiotics in some strains. The current pan-genomic analysis of P. polymyxa will help us understand the mechanisms of biological control and plant growth promotion. It will also promote the use of P. polymyxa in agriculture.
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